Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC135001.1-201ENST00000544546 283 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD3P31249 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD3P31249 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.48□□□□□ -1.85
HOXD3P31249 COX6CP3-201ENST00000580869 223 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AC091178.1-203ENST00000584586 279 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AC091135.1-201ENST00000585943 307 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD3P31249 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD3P31249 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD3P31249 GLUD1P4-201ENST00000590914 418 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD3P31249 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD3P31249 AC008945.2-201ENST00000606056 604 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 AC063943.3-201ENST00000615562 356 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 ZYXP1-201ENST00000617638 118 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD3P31249 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD3P31249 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD3P31249 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD3P31249 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
HOXD3P31249 MTND4P12-201ENST00000498999 1377 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD3P31249 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
HOXD3P31249 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD3P31249 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXD3P31249 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXD3P31249 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
HOXD3P31249 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
HOXD3P31249 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXD3P31249 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD3P31249 RNU6-451P-201ENST00000362921 107 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 RNU6-797P-201ENST00000363101 109 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 SNORD56.2-201ENST00000363242 71 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 RNA5SP28-201ENST00000363841 119 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 RNU5A-8P-201ENST00000364102 114 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 RNU6-1078P-201ENST00000364522 103 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 RPL23AP48-201ENST00000406913 488 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 OR9R1P-201ENST00000412200 877 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 HMGN1P24-201ENST00000412282 298 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC011933.1-201ENST00000413334 321 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AL356387.2-201ENST00000422272 243 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 Z74021.1-201ENST00000423610 407 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXD3P31249 MTND3P23-201ENST00000431980 347 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD3P31249 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXD3P31249 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD3P31249 RPL23AP33-201ENST00000442301 452 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXD3P31249 AC006480.1-201ENST00000449887 378 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC092001.1-201ENST00000453012 261 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC133473.1-201ENST00000455173 299 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC116533.1-201ENST00000459748 321 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC083798.1-201ENST00000472671 131 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC114786.4-201ENST00000508771 728 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC046134.1-201ENST00000514454 666 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC134698.5-201ENST00000519444 336 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD3P31249 AP000857.1-201ENST00000532151 543 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD3P31249 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXD3P31249 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD3P31249 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXD3P31249 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD3P31249 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXD3P31249 AL669831.4-202ENST00000590817 238 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 VN1R85P-201ENST00000601587 426 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AC012669.1-201ENST00000603209 283 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 AL121992.2-201ENST00000606262 256 ntBASIC3.47□□□□□ -1.85
HOXD3P31249 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXD3P31249 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD3P31249 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXD3P31249 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
HOXD3P31249 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
HOXD3P31249 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXD3P31249 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXD3P31249 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXD3P31249 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.47□□□□□ -1.85
HOXD3P31249 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.85
HOXD3P31249 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC3.46□□□□□ -1.85
HOXD3P31249 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
HOXD3P31249 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
HOXD3P31249 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
HOXD3P31249 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXD3P31249 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXD3P31249 Y_RNA.22-201ENST00000362492 102 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 RNU6-223P-201ENST00000362830 107 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 RNU6-1097P-201ENST00000363586 107 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 RNY3P3-201ENST00000363816 102 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 SNORA37-201ENST00000384504 129 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 SNORA70C-201ENST00000384538 135 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 RNU6-821P-201ENST00000390995 107 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AL359643.1-201ENST00000404109 423 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 156.3 ms