Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HMGN1P11-201ENST00000508668 303 ntBASIC3.39□□□□□ -1.87
VIMP08670 AC022483.1-201ENST00000514020 567 ntBASIC3.39□□□□□ -1.87
VIMP08670 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.39□□□□□ -1.87
VIMP08670 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VIMP08670 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.39□□□□□ -1.87
VIMP08670 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.39□□□□□ -1.87
VIMP08670 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.39□□□□□ -1.87
VIMP08670 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.39□□□□□ -1.87
VIMP08670 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.39□□□□□ -1.87
VIMP08670 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.39□□□□□ -1.87
VIMP08670 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.39□□□□□ -1.87
VIMP08670 AP001429.1-201ENST00000602568 530 ntBASIC3.39□□□□□ -1.87
VIMP08670 AC022022.2-201ENST00000602989 360 ntBASIC3.39□□□□□ -1.87
VIMP08670 AC013244.3-201ENST00000605614 388 ntBASIC3.39□□□□□ -1.87
VIMP08670 AC034229.4-201ENST00000607861 441 ntBASIC3.39□□□□□ -1.87
VIMP08670 AL450472.3-201ENST00000615578 367 ntBASIC3.39□□□□□ -1.87
VIMP08670 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
VIMP08670 AL607023.1-201ENST00000620045 248 ntBASIC3.39□□□□□ -1.87
VIMP08670 U4.6-201ENST00000621618 127 ntBASIC3.39□□□□□ -1.87
VIMP08670 AC009039.2-201ENST00000624524 529 ntBASIC3.39□□□□□ -1.87
VIMP08670 AC103706.2-201ENST00000638080 240 ntBASIC3.39□□□□□ -1.87
VIMP08670 AC092435.3-201ENST00000565538 3654 ntBASIC3.39□□□□□ -1.87
VIMP08670 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VIMP08670 AL513185.3-201ENST00000433335 1300 ntBASIC3.39□□□□□ -1.87
VIMP08670 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.39□□□□□ -1.87
VIMP08670 MTCO1P9-201ENST00000505577 1534 ntBASIC3.39□□□□□ -1.87
VIMP08670 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
VIMP08670 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VIMP08670 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VIMP08670 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
VIMP08670 RNU6-359P-201ENST00000365466 108 ntBASIC3.38□□□□□ -1.87
VIMP08670 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
VIMP08670 MIR320C1-201ENST00000408566 88 ntBASIC3.38□□□□□ -1.87
VIMP08670 RNA5SP344-201ENST00000411081 104 ntBASIC3.38□□□□□ -1.87
VIMP08670 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.38□□□□□ -1.87
VIMP08670 AC109780.2-201ENST00000413467 845 ntBASIC3.38□□□□□ -1.87
VIMP08670 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VIMP08670 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.38□□□□□ -1.87
VIMP08670 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VIMP08670 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.38□□□□□ -1.87
VIMP08670 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.38□□□□□ -1.87
VIMP08670 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.38□□□□□ -1.87
VIMP08670 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.38□□□□□ -1.87
VIMP08670 RPL17P49-201ENST00000443728 411 ntBASIC3.38□□□□□ -1.87
VIMP08670 RPL21P89-201ENST00000444021 467 ntBASIC3.38□□□□□ -1.87
VIMP08670 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.38□□□□□ -1.87
VIMP08670 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.38□□□□□ -1.87
VIMP08670 CEACAMP10-202ENST00000495431 496 ntBASIC3.38□□□□□ -1.87
VIMP08670 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.38□□□□□ -1.87
VIMP08670 HSPE1P23-201ENST00000509838 286 ntBASIC3.38□□□□□ -1.87
VIMP08670 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.38□□□□□ -1.87
VIMP08670 RNA5SP216-201ENST00000516111 123 ntBASIC3.38□□□□□ -1.87
VIMP08670 SNORA70.16-201ENST00000516390 95 ntBASIC3.38□□□□□ -1.87
VIMP08670 SCARNA20.6-201ENST00000517251 106 ntBASIC3.38□□□□□ -1.87
VIMP08670 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.38□□□□□ -1.87
VIMP08670 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.38□□□□□ -1.87
VIMP08670 AP003497.1-201ENST00000528472 562 ntBASIC3.38□□□□□ -1.87
VIMP08670 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.38□□□□□ -1.87
VIMP08670 AC125611.2-201ENST00000551907 647 ntBASIC3.38□□□□□ -1.87
VIMP08670 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.38□□□□□ -1.87
VIMP08670 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.38□□□□□ -1.87
VIMP08670 RNU6-88P-201ENST00000606801 100 ntBASIC3.38□□□□□ -1.87
VIMP08670 AL158211.4-201ENST00000606988 584 ntBASIC3.38□□□□□ -1.87
VIMP08670 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.38□□□□□ -1.87
VIMP08670 AC079395.3-201ENST00000615161 484 ntBASIC3.38□□□□□ -1.87
VIMP08670 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.38□□□□□ -1.87
VIMP08670 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
VIMP08670 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
VIMP08670 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VIMP08670 MFSD8-233ENST00000641482 4860 ntBASIC3.38□□□□□ -1.87
VIMP08670 MTND5P19-201ENST00000424872 1794 ntBASIC3.38□□□□□ -1.87
VIMP08670 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
VIMP08670 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.37□□□□□ -1.87
VIMP08670 AC092447.10-201ENST00000620607 1652 ntBASIC3.37□□□□□ -1.87
VIMP08670 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VIMP08670 ZNF807-201ENST00000328088 1707 ntBASIC3.37□□□□□ -1.87
VIMP08670 AL121657.1-201ENST00000327215 531 ntBASIC3.37□□□□□ -1.87
VIMP08670 U3.6-201ENST00000363622 211 ntBASIC3.37□□□□□ -1.87
VIMP08670 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VIMP08670 MIR493-201ENST00000385254 89 ntBASIC3.37□□□□□ -1.87
VIMP08670 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.37□□□□□ -1.87
VIMP08670 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VIMP08670 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.37□□□□□ -1.87
VIMP08670 LSM1P1-201ENST00000438629 273 ntBASIC3.37□□□□□ -1.87
VIMP08670 RPL26P6-201ENST00000440913 438 ntBASIC3.37□□□□□ -1.87
VIMP08670 AL591719.1-201ENST00000444669 744 ntBASIC3.37□□□□□ -1.87
VIMP08670 AC140076.1-201ENST00000449897 361 ntBASIC3.37□□□□□ -1.87
VIMP08670 AC115115.1-201ENST00000449927 248 ntBASIC3.37□□□□□ -1.87
VIMP08670 AC021382.1-201ENST00000483523 359 ntBASIC3.37□□□□□ -1.87
VIMP08670 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VIMP08670 AC104685.1-201ENST00000502445 371 ntBASIC3.37□□□□□ -1.87
VIMP08670 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.37□□□□□ -1.87
VIMP08670 AC109464.2-201ENST00000510242 943 ntBASIC3.37□□□□□ -1.87
VIMP08670 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.37□□□□□ -1.87
VIMP08670 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.37□□□□□ -1.87
VIMP08670 FTH1P21-201ENST00000512179 511 ntBASIC3.37□□□□□ -1.87
VIMP08670 AC034159.1-201ENST00000513885 583 ntBASIC3.37□□□□□ -1.87
VIMP08670 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.37□□□□□ -1.87
VIMP08670 EEF1A1P37-201ENST00000522748 715 ntBASIC3.37□□□□□ -1.87
VIMP08670 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms