Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 AC006333.2-201ENST00000607957 2099 ntBASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 RNA5SP413-201ENST00000516373 109 ntBASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 AL121829.2-201ENST00000620908 328 ntBASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RHBDD3Q9Y3P4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
RHBDD3Q9Y3P4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 GAS7-202ENST00000396115 929 ntTSL 5 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 POM121L13P-201ENST00000422362 380 ntBASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RHBDD3Q9Y3P4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.73■□□□□ 0.27
RHBDD3Q9Y3P4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RHBDD3Q9Y3P4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RHBDD3Q9Y3P4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RHBDD3Q9Y3P4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RHBDD3Q9Y3P4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RHBDD3Q9Y3P4 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms