Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM56Q9BRZ2 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM56Q9BRZ2 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM56Q9BRZ2 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM56Q9BRZ2 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
TRIM56Q9BRZ2 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TRIM56Q9BRZ2 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 YBX1P10-201ENST00000444752 975 ntBASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM56Q9BRZ2 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 BCL2-203ENST00000589955 5011 ntBASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 KRT8P8-201ENST00000434750 1448 ntBASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 AC104581.1-202ENST00000635932 2618 ntBASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
TRIM56Q9BRZ2 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 CD99P1-205ENST00000527459 561 ntBASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM56Q9BRZ2 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 AC090340.1-201ENST00000620778 4980 ntBASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms