Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CCDC60Q8IWA6 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.31■■□□□ 1
CCDC60Q8IWA6 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.31■■□□□ 1
CCDC60Q8IWA6 AL049597.2-201ENST00000565575 961 ntBASIC21.31■■□□□ 1
CCDC60Q8IWA6 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC60Q8IWA6 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.31■■□□□ 1
CCDC60Q8IWA6 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.31■■□□□ 1
CCDC60Q8IWA6 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.31■■□□□ 1
CCDC60Q8IWA6 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.31■■□□□ 1
CCDC60Q8IWA6 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC60Q8IWA6 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CCDC60Q8IWA6 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.31■■□□□ 1
CCDC60Q8IWA6 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC60Q8IWA6 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.3■■□□□ 1
CCDC60Q8IWA6 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.3■■□□□ 1
CCDC60Q8IWA6 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.3■■□□□ 1
CCDC60Q8IWA6 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.3■■□□□ 1
CCDC60Q8IWA6 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.3■■□□□ 1
CCDC60Q8IWA6 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.3■■□□□ 1
CCDC60Q8IWA6 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 DUX4L26-201ENST00000489078 1255 ntBASIC21.3■■□□□ 1
CCDC60Q8IWA6 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.3■■□□□ 1
CCDC60Q8IWA6 AL445228.2-201ENST00000605589 952 ntBASIC21.3■■□□□ 1
CCDC60Q8IWA6 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.3■■□□□ 1
CCDC60Q8IWA6 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
CCDC60Q8IWA6 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.3■■□□□ 1
CCDC60Q8IWA6 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC60Q8IWA6 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC60Q8IWA6 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC60Q8IWA6 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC60Q8IWA6 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC60Q8IWA6 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC60Q8IWA6 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC60Q8IWA6 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC60Q8IWA6 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC60Q8IWA6 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.29■■□□□ 1
CCDC60Q8IWA6 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC60Q8IWA6 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC60Q8IWA6 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC60Q8IWA6 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC60Q8IWA6 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC60Q8IWA6 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC60Q8IWA6 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC60Q8IWA6 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC60Q8IWA6 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 KRT18P35-201ENST00000510488 1269 ntBASIC21.28■■□□□ 1
CCDC60Q8IWA6 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC60Q8IWA6 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC60Q8IWA6 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.28■■□□□ 1
CCDC60Q8IWA6 TEX21P-204ENST00000641479 1693 ntBASIC21.28■■□□□ 1
CCDC60Q8IWA6 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.27■■□□□ 1
CCDC60Q8IWA6 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
CCDC60Q8IWA6 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC60Q8IWA6 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CCDC60Q8IWA6 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.27■■□□□ 1
CCDC60Q8IWA6 AC117947.1-201ENST00000427448 529 ntBASIC21.27■■□□□ 1
CCDC60Q8IWA6 BX664615.1-201ENST00000443558 458 ntBASIC21.27■■□□□ 1
CCDC60Q8IWA6 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CCDC60Q8IWA6 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.27■■□□□ 1
CCDC60Q8IWA6 MIR4674-201ENST00000582457 87 ntBASIC21.27■■□□□ 1
CCDC60Q8IWA6 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.27■■□□□ 1
CCDC60Q8IWA6 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms