Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC11.98□□□□□ -0.49
LINC00643Q86TS7 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 TSPY26P-202ENST00000565928 3884 ntBASIC11.98□□□□□ -0.49
LINC00643Q86TS7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 SLC25A6P5-201ENST00000435663 894 ntBASIC11.98□□□□□ -0.49
LINC00643Q86TS7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 SUZ12P1-203ENST00000578195 985 ntBASIC11.98□□□□□ -0.49
LINC00643Q86TS7 AC026202.3-201ENST00000600805 1127 ntBASIC11.98□□□□□ -0.49
LINC00643Q86TS7 AL031602.1-201ENST00000633169 911 ntBASIC11.98□□□□□ -0.49
LINC00643Q86TS7 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC11.98□□□□□ -0.49
LINC00643Q86TS7 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 AC092850.2-201ENST00000623821 2697 ntBASIC11.97□□□□□ -0.49
LINC00643Q86TS7 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 RPS2P7-201ENST00000447334 885 ntBASIC11.97□□□□□ -0.49
LINC00643Q86TS7 AC021231.2-201ENST00000594613 730 ntBASIC11.97□□□□□ -0.49
LINC00643Q86TS7 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 AL512353.2-201ENST00000448759 1962 ntBASIC11.97□□□□□ -0.49
LINC00643Q86TS7 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms