Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13CQ709C8 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
VPS13CQ709C8 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13CQ709C8 AP005901.3-202ENST00000581653 237 ntBASIC15.99■□□□□ 0.15
VPS13CQ709C8 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13CQ709C8 AC036111.1-201ENST00000533973 1582 ntBASIC15.98■□□□□ 0.15
VPS13CQ709C8 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13CQ709C8 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13CQ709C8 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13CQ709C8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13CQ709C8 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VPS13CQ709C8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13CQ709C8 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 HLA-A-201ENST00000376802 1334 ntBASIC15.97■□□□□ 0.15
VPS13CQ709C8 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 AL162741.1-201ENST00000565563 1558 ntBASIC15.97■□□□□ 0.15
VPS13CQ709C8 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 HMGN1P19-201ENST00000436976 333 ntBASIC15.97■□□□□ 0.15
VPS13CQ709C8 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 IL9RP2-201ENST00000423948 1312 ntBASIC15.97■□□□□ 0.15
VPS13CQ709C8 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
VPS13CQ709C8 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13CQ709C8 AP005212.1-201ENST00000581547 1997 ntBASIC15.96■□□□□ 0.15
VPS13CQ709C8 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
VPS13CQ709C8 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13CQ709C8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13CQ709C8 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13CQ709C8 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13CQ709C8 TSPY12P-201ENST00000421279 868 ntBASIC15.96■□□□□ 0.15
VPS13CQ709C8 KRT8P8-201ENST00000434750 1448 ntBASIC15.96■□□□□ 0.15
VPS13CQ709C8 AL662844.1-201ENST00000546340 181 ntBASIC15.96■□□□□ 0.15
VPS13CQ709C8 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.15
VPS13CQ709C8 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13CQ709C8 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13CQ709C8 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13CQ709C8 KRT8P11-201ENST00000409686 1436 ntBASIC15.96■□□□□ 0.15
VPS13CQ709C8 AC092183.1-201ENST00000469884 875 ntBASIC15.96■□□□□ 0.15
VPS13CQ709C8 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.96■□□□□ 0.15
VPS13CQ709C8 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
VPS13CQ709C8 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13CQ709C8 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
VPS13CQ709C8 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
VPS13CQ709C8 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.96■□□□□ 0.14
VPS13CQ709C8 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.96■□□□□ 0.14
VPS13CQ709C8 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.96■□□□□ 0.14
VPS13CQ709C8 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13CQ709C8 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13CQ709C8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13CQ709C8 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS13CQ709C8 TSPY19P-201ENST00000418461 509 ntBASIC15.95■□□□□ 0.14
VPS13CQ709C8 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS13CQ709C8 TSPY18P-201ENST00000441642 509 ntBASIC15.95■□□□□ 0.14
VPS13CQ709C8 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS13CQ709C8 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13CQ709C8 AC104417.2-201ENST00000562989 1793 ntBASIC15.95■□□□□ 0.14
VPS13CQ709C8 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13CQ709C8 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13CQ709C8 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
VPS13CQ709C8 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS13CQ709C8 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms