Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHD9Q3L8U1 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.33■□□□□ 0.85
CHD9Q3L8U1 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.33■□□□□ 0.85
CHD9Q3L8U1 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.33■□□□□ 0.85
CHD9Q3L8U1 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.33■□□□□ 0.85
CHD9Q3L8U1 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHD9Q3L8U1 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHD9Q3L8U1 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHD9Q3L8U1 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
CHD9Q3L8U1 AL353801.3-201ENST00000609898 542 ntBASIC20.33■□□□□ 0.84
CHD9Q3L8U1 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHD9Q3L8U1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHD9Q3L8U1 AKR1C7P-201ENST00000305623 895 ntBASIC20.32■□□□□ 0.84
CHD9Q3L8U1 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 AP005901.3-202ENST00000581653 237 ntBASIC20.32■□□□□ 0.84
CHD9Q3L8U1 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 AL157888.1-201ENST00000631930 593 ntBASIC20.32■□□□□ 0.84
CHD9Q3L8U1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHD9Q3L8U1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 AC243591.1-201ENST00000452967 1364 ntBASIC20.31■□□□□ 0.84
CHD9Q3L8U1 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 AL121772.3-201ENST00000610840 674 ntBASIC20.31■□□□□ 0.84
CHD9Q3L8U1 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHD9Q3L8U1 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.3■□□□□ 0.84
CHD9Q3L8U1 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 AL355385.1-201ENST00000606123 409 ntBASIC20.29■□□□□ 0.84
CHD9Q3L8U1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CHD9Q3L8U1 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms