Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.14■□□□□ 0.33
H3F3AP84243 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.14■□□□□ 0.33
H3F3AP84243 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
H3F3AP84243 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.13■□□□□ 0.33
H3F3AP84243 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
H3F3AP84243 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.13■□□□□ 0.33
H3F3AP84243 TSPY7P-201ENST00000431358 1114 ntBASIC17.13■□□□□ 0.33
H3F3AP84243 AL355355.2-201ENST00000442321 338 ntBASIC17.13■□□□□ 0.33
H3F3AP84243 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.13■□□□□ 0.33
H3F3AP84243 AC093827.2-201ENST00000512654 315 ntBASIC17.13■□□□□ 0.33
H3F3AP84243 MIR4497-201ENST00000583208 89 ntBASIC17.13■□□□□ 0.33
H3F3AP84243 MIR4785-201ENST00000585005 73 ntBASIC17.13■□□□□ 0.33
H3F3AP84243 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.13■□□□□ 0.33
H3F3AP84243 REXO1L10P-201ENST00000615707 1290 ntBASIC17.13■□□□□ 0.33
H3F3AP84243 AC011298.2-201ENST00000617989 482 ntBASIC17.13■□□□□ 0.33
H3F3AP84243 REXO1L12P-201ENST00000622156 912 ntBASIC17.13■□□□□ 0.33
H3F3AP84243 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
H3F3AP84243 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.13■□□□□ 0.33
H3F3AP84243 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.12■□□□□ 0.33
H3F3AP84243 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
H3F3AP84243 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
H3F3AP84243 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
H3F3AP84243 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
H3F3AP84243 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
H3F3AP84243 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 TSPY23P-201ENST00000440136 739 ntBASIC17.12■□□□□ 0.33
H3F3AP84243 SNORA78-201ENST00000459373 127 ntBASIC17.12■□□□□ 0.33
H3F3AP84243 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.12■□□□□ 0.33
H3F3AP84243 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 AP003071.4-201ENST00000562276 1284 ntBASIC17.12■□□□□ 0.33
H3F3AP84243 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.12■□□□□ 0.33
H3F3AP84243 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
H3F3AP84243 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 AP000692.2-201ENST00000608391 879 ntBASIC17.12■□□□□ 0.33
H3F3AP84243 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.12■□□□□ 0.33
H3F3AP84243 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
H3F3AP84243 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.12■□□□□ 0.33
H3F3AP84243 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
H3F3AP84243 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
H3F3AP84243 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
H3F3AP84243 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
H3F3AP84243 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.11■□□□□ 0.33
H3F3AP84243 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.11■□□□□ 0.33
H3F3AP84243 KRT17P2-201ENST00000300992 1314 ntBASIC17.11■□□□□ 0.33
H3F3AP84243 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.11■□□□□ 0.33
H3F3AP84243 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
H3F3AP84243 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
H3F3AP84243 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms