Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SOX3P41225 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.02■□□□□ 0.48
SOX3P41225 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.02■□□□□ 0.48
SOX3P41225 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.02■□□□□ 0.48
SOX3P41225 MIR4785-201ENST00000585005 73 ntBASIC18.02■□□□□ 0.48
SOX3P41225 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
SOX3P41225 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.02■□□□□ 0.48
SOX3P41225 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.02■□□□□ 0.48
SOX3P41225 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SOX3P41225 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SOX3P41225 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.02■□□□□ 0.47
SOX3P41225 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SOX3P41225 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
SOX3P41225 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SOX3P41225 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.01■□□□□ 0.47
SOX3P41225 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 KRT17P2-201ENST00000300992 1314 ntBASIC18.01■□□□□ 0.47
SOX3P41225 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 AC009237.14-201ENST00000609975 1594 ntBASIC18.01■□□□□ 0.47
SOX3P41225 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
SOX3P41225 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SOX3P41225 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.01■□□□□ 0.47
SOX3P41225 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.01■□□□□ 0.47
SOX3P41225 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.01■□□□□ 0.47
SOX3P41225 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.01■□□□□ 0.47
SOX3P41225 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.01■□□□□ 0.47
SOX3P41225 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.01■□□□□ 0.47
SOX3P41225 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SOX3P41225 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SOX3P41225 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18■□□□□ 0.47
SOX3P41225 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SOX3P41225 TREX1-205ENST00000625293 1783 ntBASIC18■□□□□ 0.47
SOX3P41225 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18■□□□□ 0.47
SOX3P41225 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
SOX3P41225 AC026471.5-201ENST00000615068 467 ntBASIC18■□□□□ 0.47
SOX3P41225 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18■□□□□ 0.47
SOX3P41225 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18■□□□□ 0.47
SOX3P41225 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
SOX3P41225 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18■□□□□ 0.47
SOX3P41225 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18■□□□□ 0.47
SOX3P41225 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18■□□□□ 0.47
SOX3P41225 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SOX3P41225 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18■□□□□ 0.47
SOX3P41225 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SOX3P41225 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18■□□□□ 0.47
SOX3P41225 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.99■□□□□ 0.47
SOX3P41225 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.99■□□□□ 0.47
SOX3P41225 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.99■□□□□ 0.47
SOX3P41225 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.99■□□□□ 0.47
SOX3P41225 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.99■□□□□ 0.47
SOX3P41225 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.99■□□□□ 0.47
SOX3P41225 KSR1P1-201ENST00000446298 240 ntBASIC17.99■□□□□ 0.47
SOX3P41225 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 CR392000.1-201ENST00000624770 1228 ntBASIC17.99■□□□□ 0.47
SOX3P41225 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
SOX3P41225 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SOX3P41225 AC026471.1-201ENST00000564629 3026 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms