Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN9O95484 KRASP1-201ENST00000407852 552 ntBASIC18.53■□□□□ 0.56
CLDN9O95484 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN9O95484 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CLDN9O95484 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.53■□□□□ 0.56
CLDN9O95484 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.53■□□□□ 0.56
CLDN9O95484 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN9O95484 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CLDN9O95484 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.53■□□□□ 0.56
CLDN9O95484 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.53■□□□□ 0.56
CLDN9O95484 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.53■□□□□ 0.56
CLDN9O95484 CROCCP3-202ENST00000420820 1947 ntBASIC18.53■□□□□ 0.56
CLDN9O95484 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.52■□□□□ 0.56
CLDN9O95484 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
CLDN9O95484 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN9O95484 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN9O95484 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN9O95484 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.52■□□□□ 0.56
CLDN9O95484 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.52■□□□□ 0.56
CLDN9O95484 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN9O95484 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN9O95484 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN9O95484 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN9O95484 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CLDN9O95484 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.52■□□□□ 0.56
CLDN9O95484 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.52■□□□□ 0.56
CLDN9O95484 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
CLDN9O95484 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.52■□□□□ 0.56
CLDN9O95484 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.52■□□□□ 0.56
CLDN9O95484 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CLDN9O95484 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CLDN9O95484 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CLDN9O95484 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.52■□□□□ 0.56
CLDN9O95484 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CLDN9O95484 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.52■□□□□ 0.56
CLDN9O95484 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN9O95484 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLDN9O95484 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
CLDN9O95484 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.51■□□□□ 0.55
CLDN9O95484 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CLDN9O95484 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.51■□□□□ 0.55
CLDN9O95484 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.51■□□□□ 0.55
CLDN9O95484 KRT16P5-201ENST00000455284 522 ntBASIC18.51■□□□□ 0.55
CLDN9O95484 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.51■□□□□ 0.55
CLDN9O95484 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.51■□□□□ 0.55
CLDN9O95484 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.51■□□□□ 0.55
CLDN9O95484 RNF165-205ENST00000588679 2904 ntBASIC18.51■□□□□ 0.55
CLDN9O95484 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CLDN9O95484 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN9O95484 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN9O95484 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.5■□□□□ 0.55
CLDN9O95484 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN9O95484 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN9O95484 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN9O95484 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.5■□□□□ 0.55
CLDN9O95484 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 TSPY21P-201ENST00000433481 731 ntBASIC18.5■□□□□ 0.55
CLDN9O95484 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN9O95484 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.5■□□□□ 0.55
CLDN9O95484 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CLDN9O95484 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN9O95484 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN9O95484 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.5■□□□□ 0.55
CLDN9O95484 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN9O95484 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN9O95484 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN9O95484 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CLDN9O95484 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CLDN9O95484 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms