Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
LDB3O75112 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.03■□□□□ 0.48
LDB3O75112 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.03■□□□□ 0.48
LDB3O75112 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 MESTP1-201ENST00000404287 994 ntBASIC18.03■□□□□ 0.48
LDB3O75112 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.03■□□□□ 0.48
LDB3O75112 AC008040.2-201ENST00000461049 708 ntBASIC18.03■□□□□ 0.48
LDB3O75112 AC091390.4-202ENST00000476426 537 ntBASIC18.03■□□□□ 0.48
LDB3O75112 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.03■□□□□ 0.48
LDB3O75112 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.03■□□□□ 0.48
LDB3O75112 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.03■□□□□ 0.48
LDB3O75112 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.03■□□□□ 0.48
LDB3O75112 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.03■□□□□ 0.48
LDB3O75112 MIR4785-201ENST00000585005 73 ntBASIC18.03■□□□□ 0.48
LDB3O75112 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
LDB3O75112 REXO1L10P-201ENST00000615707 1290 ntBASIC18.03■□□□□ 0.48
LDB3O75112 REXO1L12P-201ENST00000622156 912 ntBASIC18.03■□□□□ 0.48
LDB3O75112 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.03■□□□□ 0.48
LDB3O75112 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.03■□□□□ 0.48
LDB3O75112 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.03■□□□□ 0.48
LDB3O75112 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.03■□□□□ 0.48
LDB3O75112 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
LDB3O75112 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
LDB3O75112 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDB3O75112 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.02■□□□□ 0.48
LDB3O75112 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.02■□□□□ 0.48
LDB3O75112 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 FSCN1P1-201ENST00000568912 1481 ntBASIC18.02■□□□□ 0.48
LDB3O75112 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
LDB3O75112 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.02■□□□□ 0.48
LDB3O75112 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.02■□□□□ 0.48
LDB3O75112 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.02■□□□□ 0.48
LDB3O75112 AC116562.2-201ENST00000507042 360 ntBASIC18.02■□□□□ 0.48
LDB3O75112 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.02■□□□□ 0.48
LDB3O75112 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.02■□□□□ 0.48
LDB3O75112 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDB3O75112 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.02■□□□□ 0.47
LDB3O75112 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDB3O75112 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDB3O75112 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
LDB3O75112 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 AC141586.3-201ENST00000562166 1838 ntBASIC18.01■□□□□ 0.47
LDB3O75112 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
LDB3O75112 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.01■□□□□ 0.47
LDB3O75112 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
LDB3O75112 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.01■□□□□ 0.47
LDB3O75112 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.01■□□□□ 0.47
LDB3O75112 AC130371.2-201ENST00000619443 611 ntBASIC18.01■□□□□ 0.47
LDB3O75112 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.01■□□□□ 0.47
LDB3O75112 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.01■□□□□ 0.47
LDB3O75112 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
LDB3O75112 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
LDB3O75112 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.01■□□□□ 0.47
LDB3O75112 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.01■□□□□ 0.47
LDB3O75112 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.01■□□□□ 0.47
LDB3O75112 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDB3O75112 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18■□□□□ 0.47
LDB3O75112 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18■□□□□ 0.47
LDB3O75112 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
LDB3O75112 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LDB3O75112 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LDB3O75112 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18■□□□□ 0.47
LDB3O75112 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
LDB3O75112 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
LDB3O75112 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18■□□□□ 0.47
LDB3O75112 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms