Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-723P-201ENST00000383973 107 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 RNU6-253P-201ENST00000384730 105 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 SNORD17-201ENST00000390930 237 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 NDUFB4P4-201ENST00000404822 243 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 MTND2P18-201ENST00000419962 1030 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC005300.1-201ENST00000428401 373 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AL590103.1-201ENST00000434488 307 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC097262.1-201ENST00000452559 548 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 RNU7-170P-201ENST00000459303 61 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 SCARNA13-201ENST00000516672 275 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 RNU6-232P-201ENST00000517144 64 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 OR5D17P-201ENST00000531492 978 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC068587.4-201ENST00000533893 186 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC007834.2-201ENST00000536310 343 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC018630.1-201ENST00000541376 925 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 OSBPL9P5-201ENST00000542581 171 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC007954.1-201ENST00000554198 494 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC090888.1-201ENST00000561335 1141 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC072039.2-201ENST00000608883 439 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC244205.2-202ENST00000635781 342 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 RNU6-28P-201ENST00000362378 107 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 SNORA38.1-201ENST00000364172 131 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 Y_RNA.302-201ENST00000364997 102 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 RNU6-328P-201ENST00000390887 106 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 MIR1305-201ENST00000408300 86 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 RNU2-37P-201ENST00000410695 177 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC011233.1-201ENST00000422812 283 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC006989.1-201ENST00000427212 131 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 MTND1P20-201ENST00000430341 950 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 MTCYBP39-201ENST00000437562 491 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AL353691.1-201ENST00000451332 387 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 U3.44-201ENST00000458938 192 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC023598.1-201ENST00000472521 361 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 RPF2P2-201ENST00000504693 896 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC005178.1-201ENST00000508392 440 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 RNU2-58P-201ENST00000516403 183 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 OR6C7P-201ENST00000547875 934 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC090615.1-201ENST00000577519 154 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC122133.1-201ENST00000613964 233 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC078883.4-201ENST00000623218 367 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 AC007656.2-201ENST00000624902 4547 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 HSPA8P1-201ENST00000425843 1833 ntBASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
CCDC3Q9BQI4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
CCDC3Q9BQI4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC3Q9BQI4 AC092447.10-201ENST00000620607 1652 ntBASIC3.4□□□□□ -1.86
CCDC3Q9BQI4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC3Q9BQI4 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.4□□□□□ -1.86
CCDC3Q9BQI4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
CCDC3Q9BQI4 AL161781.1-201ENST00000354277 403 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms