Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RN7SKP57-201ENST00000517248 293 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 SCARNA20.6-201ENST00000517251 106 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC245166.1-201ENST00000521012 253 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AL132657.2-201ENST00000564417 358 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC055876.1-202ENST00000567053 138 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 PRELID3BP8-201ENST00000604148 295 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AL161756.2-201ENST00000604597 246 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC016877.3-201ENST00000606778 504 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC097504.2-201ENST00000608088 454 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 TUG1_1.1-201ENST00000610654 145 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC099778.2-201ENST00000610904 211 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 PART1_2.1-201ENST00000612397 250 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AL049777.1-201ENST00000622740 518 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC026422.1-201ENST00000623961 452 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 CRYM-AS1-204ENST00000637983 556 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC005183.1-201ENST00000603687 1979 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC009812.4-201ENST00000569134 1805 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC090740.1-201ENST00000623193 2262 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 U3.11-201ENST00000364476 212 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 RNU6-1122P-201ENST00000384449 107 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 SNORD15B-201ENST00000384714 146 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 RPS3AP26-201ENST00000398259 784 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC007899.1-201ENST00000412776 775 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AL592310.1-201ENST00000414330 671 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 RPL21P40-201ENST00000428586 483 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC108734.1-201ENST00000439549 399 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AL121871.1-201ENST00000443413 436 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 RPS3AP43-201ENST00000479743 781 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC114981.1-201ENST00000503897 678 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 VN1R104P-201ENST00000505115 1009 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC096571.1-202ENST00000506634 735 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 RNA5SP217-201ENST00000515959 91 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 IGHV3-76-201ENST00000522465 295 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC012493.2-201ENST00000595083 291 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AL133393.1-201ENST00000603277 287 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AF129408.1-201ENST00000608767 431 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AP002826.1-201ENST00000608835 315 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 MIR6076-201ENST00000617521 113 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC018692.3-201ENST00000623929 123 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC073476.4-201ENST00000628409 72 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 SNORA50A-202ENST00000629536 136 ntBASIC3.51□□□□□ -1.85
CCDC43Q96MW1 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC43Q96MW1 AC011460.1-201ENST00000636268 1834 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 Y_RNA.472-201ENST00000384322 102 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 SNORD116-12-201ENST00000384468 92 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 RPS4XP3-201ENST00000398541 413 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 RNU2-43P-201ENST00000410306 190 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 RNF2P1-201ENST00000442955 1010 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AP002884.2-201ENST00000471647 395 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AC113420.1-201ENST00000507903 571 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AC005832.3-201ENST00000537929 631 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 VN1R78P-201ENST00000597393 564 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 BNIP3P27-201ENST00000599991 412 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AC106791.2-201ENST00000604680 391 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AL162274.2-201ENST00000614406 332 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 AC099654.8-201ENST00000637757 681 ntBASIC3.5□□□□□ -1.85
CCDC43Q96MW1 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC43Q96MW1 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms