Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 HMGB1P15-201ENST00000453854 435 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC003982.1-202ENST00000469928 248 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC010285.1-201ENST00000470580 392 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC104629.1-201ENST00000494226 508 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 DYNLL1P6-201ENST00000503440 264 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 SNORA9.3-201ENST00000516383 129 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 SNORA48.10-201ENST00000516965 160 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 GTF2IP8-201ENST00000560687 584 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 MIR3605-201ENST00000583214 100 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AP001029.3-201ENST00000588063 596 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 ZNF861P-201ENST00000588126 639 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC068620.3-201ENST00000602749 560 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AP003973.1-201ENST00000604639 691 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC124016.2-201ENST00000610058 665 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC008083.4-201ENST00000615076 444 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AL512427.1-201ENST00000618593 349 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AL512506.2-201ENST00000624472 458 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC026634.1-201ENST00000634369 198 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 AC138915.1-201ENST00000565427 1685 ntBASIC3.11□□□□□ -1.91
CCDC65Q8IXS2 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AL161431.1-201ENST00000618966 4205 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 DBF4P1-201ENST00000412976 1892 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 RNU6-1249P-201ENST00000363237 111 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 RNVU1-3-201ENST00000364313 161 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 RNU6-707P-201ENST00000364647 95 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 RNU6-657P-201ENST00000383904 107 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 ARF4P3-201ENST00000397387 509 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 USP9YP21-201ENST00000420603 432 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC093156.1-201ENST00000440382 670 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC008571.1-201ENST00000467232 300 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 RPS27AP9-201ENST00000477681 438 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC069306.1-201ENST00000507006 843 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC091826.1-201ENST00000514065 313 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 RNU6-826P-201ENST00000516827 104 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 MTCO3P15-201ENST00000526563 574 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AP001542.2-201ENST00000593141 364 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC009220.3-201ENST00000604318 586 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AL583856.2-201ENST00000606298 543 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC080188.3-201ENST00000624842 748 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 AC126544.2-201ENST00000625174 749 ntBASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC65Q8IXS2 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 SUGT1P1-201ENST00000379514 476 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 RNU6-1257P-201ENST00000384625 110 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 MIR181B1-201ENST00000385240 110 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 RNU6-821P-201ENST00000390995 107 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 FO393413.1-201ENST00000402892 195 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 SNORD88.1-201ENST00000408684 91 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 HMGN2P35-201ENST00000412164 270 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 BTF3P8-201ENST00000414577 526 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 RAD23BP2-201ENST00000416003 1207 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 HSFY1P1-201ENST00000423928 1178 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 PTGES3P1-201ENST00000439531 483 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 GSTA11P-201ENST00000452866 669 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 RPS23P3-201ENST00000470993 430 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 AC010301.1-201ENST00000473936 355 ntBASIC3.09□□□□□ -1.91
CCDC65Q8IXS2 AC011825.1-201ENST00000484967 388 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms