Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NPAS3Q8IXF0 AC020656.2-201ENST00000613291 5309 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC018628.1-201ENST00000624147 3819 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 LINC02555-201ENST00000563933 1951 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 MSL3P1-202ENST00000440028 1468 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 RNU6-444P-201ENST00000383988 108 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 RNU6-790P-201ENST00000384479 105 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AL133388.1-201ENST00000404509 287 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AL009179.1-201ENST00000406085 265 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 RNU6-651P-201ENST00000411040 105 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 Y_RNA.625-201ENST00000411256 107 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 CRIP1P1-201ENST00000427567 185 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC108734.1-201ENST00000439549 399 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 snoU13.8-201ENST00000458890 104 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 snoU13.29-201ENST00000459370 104 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 RN7SL97P-201ENST00000486780 299 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 RPL30P1-201ENST00000488676 339 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 OR51K1P-201ENST00000510214 950 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 RNY3P16-201ENST00000516338 101 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 RNU6-941P-201ENST00000516346 108 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 RNU6-911P-201ENST00000516523 104 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 CDH12P4-201ENST00000517835 295 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 CDH12P3-201ENST00000517935 295 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 CDH12P1-201ENST00000518435 295 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 HMGB1P40-201ENST00000525121 540 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AL390726.5-202ENST00000564800 256 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC006116.3-201ENST00000592968 361 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AL049539.1-201ENST00000611964 459 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC084757.4-201ENST00000616350 526 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC109583.2-201ENST00000617367 129 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 CDC27P2-201ENST00000425026 1922 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC138907.8-201ENST00000623981 2256 ntBASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.73□□□□□ -1.49
NPAS3Q8IXF0 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 RNA5SP305-201ENST00000362665 119 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 RNU1-43P-201ENST00000365052 165 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 Y_RNA.400-201ENST00000383963 111 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 Y_RNA.581-201ENST00000391017 97 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 DUTP5-201ENST00000406790 469 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 SRSF1P1-201ENST00000424058 520 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AP001324.2-201ENST00000461163 319 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AP000893.1-201ENST00000474462 794 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AP000926.1-201ENST00000479573 241 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 RPL30P10-201ENST00000488148 337 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 RPL23AP55-201ENST00000498163 452 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 SNRPCP2-201ENST00000504370 475 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 RFPL4AP3-201ENST00000515267 345 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AL121576.1-201ENST00000556055 276 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 RPL23AP84-201ENST00000571193 464 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 MIR4646-201ENST00000580775 63 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 MIR4436B2-201ENST00000581415 91 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 MIR4436B1-201ENST00000583272 91 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC017100.2-201ENST00000584628 355 ntBASIC5.72□□□□□ -1.49
NPAS3Q8IXF0 AC008521.1-201ENST00000587471 187 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms