Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USP39Q53GS9 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.58□□□□□ -1.68
USP39Q53GS9 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP39Q53GS9 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP39Q53GS9 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USP39Q53GS9 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USP39Q53GS9 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP39Q53GS9 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.57□□□□□ -1.68
USP39Q53GS9 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP39Q53GS9 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
USP39Q53GS9 AL512646.1-201ENST00000269395 1077 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 RNA5SP366-201ENST00000365454 123 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 MIR23A-201ENST00000385245 73 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 HMGB1P17-201ENST00000403495 628 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 TXNP7-201ENST00000406296 293 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 RNU2-28P-201ENST00000410457 189 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 MTND3P8-201ENST00000412909 339 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.57□□□□□ -1.68
USP39Q53GS9 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.57□□□□□ -1.68
USP39Q53GS9 RPS15AP9-201ENST00000439856 381 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC104651.2-201ENST00000447549 528 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 SNORD19B-201ENST00000459623 84 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.57□□□□□ -1.68
USP39Q53GS9 RPL23AP71-201ENST00000470966 469 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.57□□□□□ -1.68
USP39Q53GS9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.57□□□□□ -1.68
USP39Q53GS9 AC034159.1-201ENST00000513885 583 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 Y_RNA.691-201ENST00000516611 103 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 RNU6-201P-201ENST00000517100 61 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC022616.6-201ENST00000520479 119 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.57□□□□□ -1.68
USP39Q53GS9 PSMA2P1-201ENST00000526365 646 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC087241.2-201ENST00000535801 324 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 SCOCP1-201ENST00000554676 349 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC025884.1-201ENST00000556034 378 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.57□□□□□ -1.68
USP39Q53GS9 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.57□□□□□ -1.68
USP39Q53GS9 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.57□□□□□ -1.68
USP39Q53GS9 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.57□□□□□ -1.68
USP39Q53GS9 AC124312.5-201ENST00000604451 268 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC115621.1-201ENST00000604653 858 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC004853.1-201ENST00000604902 698 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 AC008785.1-201ENST00000624475 456 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 MIR3653-201ENST00000625572 110 ntBASIC4.57□□□□□ -1.68
USP39Q53GS9 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP39Q53GS9 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP39Q53GS9 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP39Q53GS9 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP39Q53GS9 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP39Q53GS9 RNU5E-1-201ENST00000362477 120 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 RNU6-223P-201ENST00000362830 107 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 SNORA4.3-201ENST00000365564 137 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 MIR659-201ENST00000384963 97 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 MIR559-201ENST00000385188 96 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 MIR134-201ENST00000385258 73 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 RNU6-952P-201ENST00000391164 108 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AL080315.1-201ENST00000406055 466 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.56□□□□□ -1.68
USP39Q53GS9 IFNA20P-201ENST00000436840 528 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC006511.1-201ENST00000470614 315 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.56□□□□□ -1.68
USP39Q53GS9 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AP003730.1-201ENST00000524605 285 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC010525.2-201ENST00000590920 195 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AC136443.5-201ENST00000603741 370 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AC124303.1-201ENST00000605703 360 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.56□□□□□ -1.68
USP39Q53GS9 AL133215.3-201ENST00000609801 448 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AC009237.17-201ENST00000618111 748 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AL713922.2-201ENST00000619384 716 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AC090971.5-201ENST00000621102 293 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AC009161.2-201ENST00000624626 138 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 AL672167.1-203ENST00000641299 2975 ntBASIC4.56□□□□□ -1.68
USP39Q53GS9 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP39Q53GS9 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP39Q53GS9 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.55□□□□□ -1.68
USP39Q53GS9 MTND5P1-201ENST00000445440 1375 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 MTND4P35-201ENST00000604257 1375 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.55□□□□□ -1.68
USP39Q53GS9 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms