Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL049777.1-201ENST00000622740 518 ntBASIC3.12□□□□□ -1.91
MSH4O15457 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.12□□□□□ -1.91
MSH4O15457 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.12□□□□□ -1.91
MSH4O15457 AC013437.2-201ENST00000639587 677 ntBASIC3.12□□□□□ -1.91
MSH4O15457 MTCO1P23-201ENST00000415223 1526 ntBASIC3.12□□□□□ -1.91
MSH4O15457 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
MSH4O15457 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
MSH4O15457 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
MSH4O15457 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
MSH4O15457 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
MSH4O15457 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.11□□□□□ -1.91
MSH4O15457 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 AP005901.5-201ENST00000545779 1796 ntBASIC3.11□□□□□ -1.91
MSH4O15457 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
MSH4O15457 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
MSH4O15457 AL360182.1-201ENST00000397433 468 ntBASIC3.11□□□□□ -1.91
MSH4O15457 RNA5SP129-201ENST00000410276 118 ntBASIC3.11□□□□□ -1.91
MSH4O15457 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH4O15457 GTF2IP7-202ENST00000436677 309 ntBASIC3.11□□□□□ -1.91
MSH4O15457 snoU13.4-201ENST00000458916 104 ntBASIC3.11□□□□□ -1.91
MSH4O15457 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.11□□□□□ -1.91
MSH4O15457 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 MTCO2P32-201ENST00000514865 403 ntBASIC3.11□□□□□ -1.91
MSH4O15457 RNA5SP356-201ENST00000515972 94 ntBASIC3.11□□□□□ -1.91
MSH4O15457 RNU6-276P-201ENST00000516114 96 ntBASIC3.11□□□□□ -1.91
MSH4O15457 SNORA19.3-201ENST00000516165 130 ntBASIC3.11□□□□□ -1.91
MSH4O15457 RNU6-1261P-201ENST00000517194 104 ntBASIC3.11□□□□□ -1.91
MSH4O15457 AC010376.1-201ENST00000522101 334 ntBASIC3.11□□□□□ -1.91
MSH4O15457 IGHV3-76-201ENST00000522465 295 ntBASIC3.11□□□□□ -1.91
MSH4O15457 EEF1B2P4-201ENST00000551398 348 ntBASIC3.11□□□□□ -1.91
MSH4O15457 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.11□□□□□ -1.91
MSH4O15457 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.11□□□□□ -1.91
MSH4O15457 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 AL035411.2-201ENST00000604022 421 ntBASIC3.11□□□□□ -1.91
MSH4O15457 AC009237.15-201ENST00000610252 501 ntBASIC3.11□□□□□ -1.91
MSH4O15457 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 AC092650.2-201ENST00000619984 902 ntBASIC3.11□□□□□ -1.91
MSH4O15457 AC104985.3-201ENST00000623479 597 ntBASIC3.11□□□□□ -1.91
MSH4O15457 MKKS-204ENST00000639674 192 ntBASIC3.11□□□□□ -1.91
MSH4O15457 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
MSH4O15457 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH4O15457 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSH4O15457 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.1□□□□□ -1.91
MSH4O15457 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
MSH4O15457 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
MSH4O15457 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSH4O15457 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.1□□□□□ -1.91
MSH4O15457 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSH4O15457 MIR26A1-201ENST00000362205 77 ntBASIC3.1□□□□□ -1.91
MSH4O15457 Y_RNA.25-201ENST00000362528 102 ntBASIC3.1□□□□□ -1.91
MSH4O15457 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.1□□□□□ -1.91
MSH4O15457 AC092447.6-201ENST00000414578 210 ntBASIC3.1□□□□□ -1.91
MSH4O15457 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.1□□□□□ -1.91
MSH4O15457 AC012497.1-201ENST00000429392 575 ntBASIC3.1□□□□□ -1.91
MSH4O15457 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.1□□□□□ -1.91
MSH4O15457 GTF2IP3-201ENST00000433887 494 ntBASIC3.1□□□□□ -1.91
MSH4O15457 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.1□□□□□ -1.91
MSH4O15457 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.1□□□□□ -1.91
MSH4O15457 PNPLA4P1-201ENST00000458328 305 ntBASIC3.1□□□□□ -1.91
MSH4O15457 HMGB1P25-201ENST00000468402 607 ntBASIC3.1□□□□□ -1.91
MSH4O15457 AC104982.1-201ENST00000478775 574 ntBASIC3.1□□□□□ -1.91
MSH4O15457 AC090525.1-201ENST00000479116 478 ntBASIC3.1□□□□□ -1.91
MSH4O15457 AC010460.2-201ENST00000509054 677 ntBASIC3.1□□□□□ -1.91
MSH4O15457 AC007954.1-201ENST00000554198 494 ntBASIC3.1□□□□□ -1.91
MSH4O15457 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.1□□□□□ -1.91
MSH4O15457 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.1□□□□□ -1.91
MSH4O15457 AC024060.1-201ENST00000607052 494 ntBASIC3.1□□□□□ -1.91
MSH4O15457 AC005046.1-201ENST00000608515 625 ntBASIC3.1□□□□□ -1.91
MSH4O15457 AC091925.2-201ENST00000625059 256 ntBASIC3.1□□□□□ -1.91
MSH4O15457 AC004808.1-201ENST00000627671 721 ntBASIC3.1□□□□□ -1.91
MSH4O15457 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
MSH4O15457 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
MSH4O15457 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
MSH4O15457 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSH4O15457 AC021755.1-201ENST00000559747 1447 ntBASIC3.1□□□□□ -1.91
MSH4O15457 AC002546.1-201ENST00000588041 2504 ntBASIC3.1□□□□□ -1.91
MSH4O15457 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
MSH4O15457 AL049780.3-201ENST00000624612 1583 ntBASIC3.09□□□□□ -1.91
MSH4O15457 RNA5SP295-201ENST00000362655 121 ntBASIC3.09□□□□□ -1.91
MSH4O15457 SNORA5B-201ENST00000363786 132 ntBASIC3.09□□□□□ -1.91
MSH4O15457 DEFB109C-201ENST00000382575 264 ntBASIC3.09□□□□□ -1.91
MSH4O15457 DEFB109B-201ENST00000382656 264 ntBASIC3.09□□□□□ -1.91
MSH4O15457 Y_RNA.510-201ENST00000384511 114 ntBASIC3.09□□□□□ -1.91
MSH4O15457 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
MSH4O15457 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.09□□□□□ -1.91
MSH4O15457 RNA5SP21-201ENST00000410917 96 ntBASIC3.09□□□□□ -1.91
MSH4O15457 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH4O15457 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH4O15457 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH4O15457 AC112220.1-201ENST00000434628 355 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.09□□□□□ -1.91
MSH4O15457 AC108938.1-201ENST00000451204 136 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AL445669.2-201ENST00000454425 421 ntBASIC3.09□□□□□ -1.91
MSH4O15457 NECAP1P2-201ENST00000455668 727 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms