Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC091390.1-201ENST00000433904 331 ntBASIC2□□□□□ -2.09
HMGB3O15347 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2□□□□□ -2.09
HMGB3O15347 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC2□□□□□ -2.09
HMGB3O15347 HMGN3P1-201ENST00000453847 193 ntBASIC2□□□□□ -2.09
HMGB3O15347 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2□□□□□ -2.09
HMGB3O15347 RPS20P24-201ENST00000457473 361 ntBASIC2□□□□□ -2.09
HMGB3O15347 PNPLA4P1-201ENST00000458328 305 ntBASIC2□□□□□ -2.09
HMGB3O15347 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2□□□□□ -2.09
HMGB3O15347 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC2□□□□□ -2.09
HMGB3O15347 AL135752.1-201ENST00000479477 471 ntBASIC2□□□□□ -2.09
HMGB3O15347 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2□□□□□ -2.09
HMGB3O15347 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC2□□□□□ -2.09
HMGB3O15347 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2□□□□□ -2.09
HMGB3O15347 RNU6-1095P-201ENST00000516148 108 ntBASIC2□□□□□ -2.09
HMGB3O15347 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2□□□□□ -2.09
HMGB3O15347 AP003102.1-201ENST00000525638 661 ntBASIC2□□□□□ -2.09
HMGB3O15347 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2□□□□□ -2.09
HMGB3O15347 HMGB1P14-201ENST00000557424 591 ntBASIC2□□□□□ -2.09
HMGB3O15347 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2□□□□□ -2.09
HMGB3O15347 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2□□□□□ -2.09
HMGB3O15347 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2□□□□□ -2.09
HMGB3O15347 AMZ2P1-203ENST00000565833 850 ntBASIC2□□□□□ -2.09
HMGB3O15347 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC2□□□□□ -2.09
HMGB3O15347 ISCA1P3-201ENST00000577104 373 ntBASIC2□□□□□ -2.09
HMGB3O15347 AC011260.1-201ENST00000578420 472 ntBASIC2□□□□□ -2.09
HMGB3O15347 AC022069.1-201ENST00000582910 658 ntBASIC2□□□□□ -2.09
HMGB3O15347 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC2□□□□□ -2.09
HMGB3O15347 AC055876.5-201ENST00000605667 259 ntBASIC2□□□□□ -2.09
HMGB3O15347 MIR7975-201ENST00000619350 68 ntBASIC2□□□□□ -2.09
HMGB3O15347 UCA1.1-201ENST00000620952 75 ntBASIC2□□□□□ -2.09
HMGB3O15347 AC079597.1-201ENST00000624306 508 ntBASIC2□□□□□ -2.09
HMGB3O15347 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2□□□□□ -2.09
HMGB3O15347 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2□□□□□ -2.09
HMGB3O15347 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HMGB3O15347 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC1.99□□□□□ -2.09
HMGB3O15347 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.99□□□□□ -2.09
HMGB3O15347 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC1.99□□□□□ -2.09
HMGB3O15347 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
HMGB3O15347 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC1.99□□□□□ -2.09
HMGB3O15347 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HMGB3O15347 RNU6-1339P-201ENST00000363574 91 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 RNU6-173P-201ENST00000364215 104 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 RNU6-921P-201ENST00000384361 107 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 SNORA80E-201ENST00000384744 137 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 MIR524-201ENST00000385242 87 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
HMGB3O15347 RNA5SP354-201ENST00000391247 136 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 AL356057.3-201ENST00000402607 340 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 RNU2-17P-201ENST00000410290 190 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 TATDN1P1-201ENST00000414123 891 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 EEF1A1P41-201ENST00000414667 207 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC1.99□□□□□ -2.09
HMGB3O15347 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.99□□□□□ -2.09
HMGB3O15347 RPL27AP8-201ENST00000424277 446 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 RPP40P1-201ENST00000426762 456 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.99□□□□□ -2.09
HMGB3O15347 AC009296.1-201ENST00000443146 155 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 AL121871.1-201ENST00000443413 436 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 H2AFZP6-201ENST00000444403 394 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 AC109486.1-201ENST00000486833 374 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 MTCO3P42-201ENST00000509488 518 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC1.99□□□□□ -2.09
HMGB3O15347 LEF1-218ENST00000512172 598 ntTSL 2 BASIC1.99□□□□□ -2.09
HMGB3O15347 MTCO3P39-201ENST00000514812 518 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HMGB3O15347 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.99□□□□□ -2.09
HMGB3O15347 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC1.99□□□□□ -2.09
HMGB3O15347 AC007115.1-201ENST00000546853 234 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 AC121758.2-201ENST00000553271 193 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC1.99□□□□□ -2.09
HMGB3O15347 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC1.99□□□□□ -2.09
HMGB3O15347 CYCSP39-201ENST00000565821 309 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC1.99□□□□□ -2.09
HMGB3O15347 AC009127.3-201ENST00000570531 403 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC1.99□□□□□ -2.09
HMGB3O15347 AC124312.4-201ENST00000605533 310 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.99□□□□□ -2.09
HMGB3O15347 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.99□□□□□ -2.09
HMGB3O15347 AP003400.6-201ENST00000624698 740 ntBASIC1.99□□□□□ -2.09
HMGB3O15347 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.99□□□□□ -2.09
HMGB3O15347 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC1.98□□□□□ -2.09
HMGB3O15347 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HMGB3O15347 RPL21P132-201ENST00000331267 462 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HMGB3O15347 MIR422A-201ENST00000362286 90 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 RNA5SP374-201ENST00000362939 125 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 RNU1-105P-201ENST00000363470 161 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 RNA5SP267-201ENST00000364893 126 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC1.98□□□□□ -2.09
HMGB3O15347 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.98□□□□□ -2.09
HMGB3O15347 DHFRP5-201ENST00000406944 564 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 RNU4-72P-201ENST00000410754 173 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.98□□□□□ -2.09
HMGB3O15347 AC009237.2-201ENST00000421358 284 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 MTCO2P17-201ENST00000424336 677 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 MTCO3P30-201ENST00000426425 670 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 AC098826.1-201ENST00000433943 471 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 ANKRD30BP3-201ENST00000444850 1070 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 IFNA11P-201ENST00000446352 526 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 154 ms