Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC046144.1-201ENST00000478559 1853 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 OR14L1P-202ENST00000641545 3009 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RNA5SP507-201ENST00000363603 121 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RNU4-1-201ENST00000363925 141 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RNU6-730P-201ENST00000383954 104 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 MIR514A2-201ENST00000385131 88 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 MIR514A3-201ENST00000385132 88 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 MIR92A2-201ENST00000385299 75 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 MIR548F5-201ENST00000408421 86 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RNU2-64P-201ENST00000411315 191 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 MCFD2P1-201ENST00000417812 300 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RBMY2KP-201ENST00000418221 992 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC099336.2-201ENST00000422457 254 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RPL31P12-201ENST00000422587 358 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AL353777.1-201ENST00000425552 326 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RPL7P4-203ENST00000430239 730 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AL451139.1-201ENST00000434718 346 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RPS3AP54-201ENST00000435535 734 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC092809.1-201ENST00000441469 474 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 CEACAMP7-201ENST00000444105 496 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RPS27AP15-201ENST00000447672 466 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 SLC25A18P1-201ENST00000449385 454 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AL935212.3-201ENST00000450729 284 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC107399.1-201ENST00000451226 265 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 HIGD1AP8-201ENST00000453927 274 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC099560.2-201ENST00000457554 255 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC083904.1-201ENST00000487828 231 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AL035404.1-201ENST00000497982 568 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 MRPS33P2-201ENST00000507850 322 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 FTH1P9-201ENST00000513251 355 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RNU6-789P-201ENST00000517105 102 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RNU6-709P-201ENST00000517257 104 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC090572.1-201ENST00000519251 160 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 RPL7P20-201ENST00000520308 745 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC022616.3-201ENST00000523940 148 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AP000889.1-201ENST00000530968 660 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 HMGN2P6-201ENST00000551091 273 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC068831.4-201ENST00000556118 109 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AL049839.1-201ENST00000556151 657 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC116447.1-201ENST00000613153 453 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AL162373.1-201ENST00000620433 407 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 AC091905.4-201ENST00000623432 202 ntBASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC39Q9UFE4 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC39Q9UFE4 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC39Q9UFE4 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 MIR548K-201ENST00000408406 116 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 GSTM3P2-201ENST00000412746 530 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 AL356010.1-201ENST00000456364 102 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 ELOCP24-201ENST00000456370 334 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 RPL37P3-201ENST00000456825 293 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 RNU6-976P-201ENST00000516086 111 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 RNU6-635P-201ENST00000516651 102 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 AC123904.2-201ENST00000548059 300 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 MTND6P33-201ENST00000571794 183 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 MIR7154-201ENST00000620673 73 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 AC078938.1-201ENST00000620993 318 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 CR381572.2-201ENST00000624852 397 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 MTND5P19-201ENST00000424872 1794 ntBASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC39Q9UFE4 KPNA2P2-201ENST00000419546 1489 ntBASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC39Q9UFE4 Y_RNA.5-201ENST00000362334 102 ntBASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms