Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC002546.1-201ENST00000588041 2504 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AL672167.1-206ENST00000356293 943 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 RNU6-501P-201ENST00000364072 100 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 DEFB109C-201ENST00000382575 264 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 DEFB109B-201ENST00000382656 264 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 RNU6-1207P-201ENST00000384343 107 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 MTCO1P17-201ENST00000411522 491 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 RPL21P109-201ENST00000422213 475 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC006548.1-201ENST00000427470 102 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 ARF4P2-201ENST00000430209 526 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AL365184.2-201ENST00000431139 435 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC087650.1-201ENST00000431445 468 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 SETP8-201ENST00000435341 628 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 MUPP-201ENST00000438111 566 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AL512286.1-201ENST00000439244 400 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 RPL23AP52-201ENST00000439311 478 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AL356535.1-201ENST00000440335 398 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AL136097.1-201ENST00000456945 913 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 ACTR3P3-201ENST00000480448 893 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC106872.3-201ENST00000495104 446 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 RPL31P61-201ENST00000496160 376 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC080014.1-201ENST00000496877 1201 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 POU5F1P7-201ENST00000508759 541 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 FTH1P21-201ENST00000512179 511 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC091965.2-201ENST00000512324 613 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 EEF1B2P4-201ENST00000551398 348 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 TVP23BP1-201ENST00000557500 617 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 PCMTD1P2-201ENST00000565017 355 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC034268.2-201ENST00000571784 482 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC090615.1-201ENST00000577519 154 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AP001004.1-201ENST00000582468 324 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 PIGPP4-201ENST00000584447 307 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 XIAPP1-201ENST00000603162 600 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC012669.1-201ENST00000603209 283 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 HMGB1P50-201ENST00000605814 607 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AL121772.2-201ENST00000614331 297 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AL357080.1-201ENST00000617394 239 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 AC015967.1-201ENST00000619893 476 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 CR381572.1-201ENST00000625098 102 ntBASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
PDLIM3Q53GG5 AC027287.1-201ENST00000553115 1453 ntBASIC3.34□□□□□ -1.88
PDLIM3Q53GG5 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
PDLIM3Q53GG5 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
PDLIM3Q53GG5 RLIMP1-201ENST00000339626 1680 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL161781.1-201ENST00000354277 403 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 RNU1-14P-201ENST00000362759 152 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 RNA5SP130-201ENST00000364431 114 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 RNU5A-2P-201ENST00000384337 116 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 RNU6-809P-201ENST00000384461 107 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 Y_RNA.548-201ENST00000384656 105 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 RAD23BP2-201ENST00000416003 1207 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC016907.1-201ENST00000419483 435 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL445669.1-201ENST00000426743 755 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL390023.1-201ENST00000428836 262 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 NEK4P1-201ENST00000433383 879 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 MRPS18BP2-201ENST00000434310 759 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC096638.2-201ENST00000434965 711 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 HMGN2P20-201ENST00000437531 273 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AF228730.2-201ENST00000438784 848 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AP000542.1-201ENST00000448473 371 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 RNA5SP246-201ENST00000458909 119 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms