Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AL450326.2-201ENST00000421913 1962 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HOXA4Q00056 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA4Q00056 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA4Q00056 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HOXA4Q00056 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA4Q00056 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA4Q00056 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
HOXA4Q00056 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HOXA4Q00056 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 OR4G1P-203ENST00000641984 1631 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 ASNSP3-201ENST00000451989 1306 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC126755.2-208ENST00000327792 462 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC138969.1-213ENST00000331436 462 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 MIR192-201ENST00000384915 110 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HOXA4Q00056 U3.22-201ENST00000391120 215 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 RNA5SP397-201ENST00000391323 118 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AL359643.1-201ENST00000404109 423 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AL356432.1-201ENST00000405809 419 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 RNU6-1148P-201ENST00000410992 104 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC119751.6-201ENST00000416712 186 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA4Q00056 AC005517.2-201ENST00000424673 553 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 RPL35AP12-201ENST00000425362 338 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 SRIP2-201ENST00000428470 166 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 RPL23AP1-201ENST00000428990 471 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA4Q00056 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA4Q00056 MTND1P9-201ENST00000453775 944 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 GMFBP1-201ENST00000467831 427 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC126389.1-201ENST00000477436 290 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA4Q00056 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 AC135721.1-201ENST00000497954 479 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA4Q00056 AC004062.1-201ENST00000509926 645 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC112206.3-201ENST00000514578 389 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA4Q00056 RN7SKP234-201ENST00000517173 224 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 IGLVIV-65-201ENST00000517313 360 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXA4Q00056 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA4Q00056 OR5B10P-201ENST00000532869 642 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 OR8L1P-201ENST00000534005 955 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA4Q00056 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
HOXA4Q00056 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA4Q00056 AC010680.3-201ENST00000604215 520 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC244100.1-202ENST00000621554 382 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC005086.4-201ENST00000623065 213 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AC090617.10-201ENST00000624308 134 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 AP003400.5-201ENST00000624827 617 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA4Q00056 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA4Q00056 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA4Q00056 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.82□□□□□ -1.8
HOXA4Q00056 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
HOXA4Q00056 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 AC092435.4-201ENST00000623012 4159 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA4Q00056 RAD17P1-201ENST00000418130 2042 ntBASIC3.82□□□□□ -1.8
HOXA4Q00056 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA4Q00056 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA4Q00056 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA4Q00056 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
HOXA4Q00056 PABPC1P7-201ENST00000413177 1513 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA4Q00056 AL157700.1-201ENST00000561973 1432 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA4Q00056 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HOXA4Q00056 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA4Q00056 RN7SKP115-201ENST00000363177 317 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 SNORA71.2-201ENST00000364941 134 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 MIR454-201ENST00000390180 115 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AL583835.1-201ENST00000399570 407 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 RNA5SP56-201ENST00000410277 118 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 RNU2-36P-201ENST00000410361 191 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 RNU4-78P-201ENST00000410940 126 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AL139095.3-201ENST00000419672 1203 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AC018630.2-202ENST00000422992 927 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 OR2AS1P-201ENST00000427827 319 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.81□□□□□ -1.8
HOXA4Q00056 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA4Q00056 PTMAP3-201ENST00000447474 330 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 MTND3P16-201ENST00000452205 344 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA4Q00056 snoU109.4-201ENST00000458953 143 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 ST13P14-201ENST00000474095 734 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms