Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RPL23AP74-201ENST00000437246 471 ntBASIC3.34□□□□□ -1.88
MSH6P52701 FABP5P3-201ENST00000437960 408 ntBASIC3.34□□□□□ -1.88
MSH6P52701 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.34□□□□□ -1.88
MSH6P52701 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.34□□□□□ -1.88
MSH6P52701 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.34□□□□□ -1.88
MSH6P52701 AC103975.1-201ENST00000482506 483 ntBASIC3.34□□□□□ -1.88
MSH6P52701 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.34□□□□□ -1.88
MSH6P52701 AC104090.1-201ENST00000506341 1171 ntBASIC3.34□□□□□ -1.88
MSH6P52701 AC117522.2-201ENST00000510049 657 ntBASIC3.34□□□□□ -1.88
MSH6P52701 MIR4498-201ENST00000577599 66 ntBASIC3.34□□□□□ -1.88
MSH6P52701 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
MSH6P52701 AC009318.2-201ENST00000610917 651 ntBASIC3.34□□□□□ -1.88
MSH6P52701 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
MSH6P52701 RMST_10.1-201ENST00000616309 154 ntBASIC3.34□□□□□ -1.88
MSH6P52701 AC073569.3-201ENST00000619055 682 ntBASIC3.34□□□□□ -1.88
MSH6P52701 AP003400.6-201ENST00000624698 740 ntBASIC3.34□□□□□ -1.88
MSH6P52701 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.34□□□□□ -1.88
MSH6P52701 MIR4278-201ENST00000636094 69 ntBASIC3.34□□□□□ -1.88
MSH6P52701 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
MSH6P52701 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
MSH6P52701 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
MSH6P52701 AC022336.2-201ENST00000568966 2538 ntBASIC3.33□□□□□ -1.88
MSH6P52701 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
MSH6P52701 SNORD56.4-201ENST00000363883 71 ntBASIC3.33□□□□□ -1.88
MSH6P52701 RNA5SP456-201ENST00000364002 114 ntBASIC3.33□□□□□ -1.88
MSH6P52701 SNORD88.1-201ENST00000408684 91 ntBASIC3.33□□□□□ -1.88
MSH6P52701 Y_RNA.595-201ENST00000410403 105 ntBASIC3.33□□□□□ -1.88
MSH6P52701 RNU4-27P-201ENST00000410889 139 ntBASIC3.33□□□□□ -1.88
MSH6P52701 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH6P52701 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH6P52701 RPL37P6-202ENST00000464216 403 ntBASIC3.33□□□□□ -1.88
MSH6P52701 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH6P52701 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH6P52701 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH6P52701 AC108729.3-201ENST00000513484 108 ntBASIC3.33□□□□□ -1.88
MSH6P52701 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.33□□□□□ -1.88
MSH6P52701 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.33□□□□□ -1.88
MSH6P52701 SNRPGP18-201ENST00000553000 214 ntBASIC3.33□□□□□ -1.88
MSH6P52701 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH6P52701 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH6P52701 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH6P52701 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
MSH6P52701 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH6P52701 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.33□□□□□ -1.88
MSH6P52701 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.33□□□□□ -1.88
MSH6P52701 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH6P52701 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
MSH6P52701 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
MSH6P52701 USP9YP19-201ENST00000412165 485 ntBASIC3.32□□□□□ -1.88
MSH6P52701 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.32□□□□□ -1.88
MSH6P52701 Z98742.2-201ENST00000431564 187 ntBASIC3.32□□□□□ -1.88
MSH6P52701 AL512661.1-201ENST00000434586 1253 ntBASIC3.32□□□□□ -1.88
MSH6P52701 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH6P52701 AL024509.2-201ENST00000493462 493 ntBASIC3.32□□□□□ -1.88
MSH6P52701 MTND3P24-201ENST00000506306 329 ntBASIC3.32□□□□□ -1.88
MSH6P52701 AC026436.1-201ENST00000510537 270 ntBASIC3.32□□□□□ -1.88
MSH6P52701 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH6P52701 AC027338.1-201ENST00000514840 825 ntBASIC3.32□□□□□ -1.88
MSH6P52701 RNU2-58P-201ENST00000516403 183 ntBASIC3.32□□□□□ -1.88
MSH6P52701 PTP4A1P6-201ENST00000531034 478 ntBASIC3.32□□□□□ -1.88
MSH6P52701 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.32□□□□□ -1.88
MSH6P52701 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.32□□□□□ -1.88
MSH6P52701 XIST_intron.1-201ENST00000619444 68 ntBASIC3.32□□□□□ -1.88
MSH6P52701 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
MSH6P52701 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
MSH6P52701 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.32□□□□□ -1.88
MSH6P52701 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
MSH6P52701 MTND5P7-201ENST00000413558 1798 ntBASIC3.32□□□□□ -1.88
MSH6P52701 RNU6-14P-201ENST00000384630 106 ntBASIC3.31□□□□□ -1.88
MSH6P52701 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.31□□□□□ -1.88
MSH6P52701 RPL31P45-201ENST00000419532 356 ntBASIC3.31□□□□□ -1.88
MSH6P52701 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.31□□□□□ -1.88
MSH6P52701 AL592045.1-201ENST00000429867 352 ntBASIC3.31□□□□□ -1.88
MSH6P52701 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.31□□□□□ -1.88
MSH6P52701 UBE2V1P5-201ENST00000440070 405 ntBASIC3.31□□□□□ -1.88
MSH6P52701 RPL21P103-201ENST00000479921 488 ntBASIC3.31□□□□□ -1.88
MSH6P52701 RPL9P33-201ENST00000484311 566 ntBASIC3.31□□□□□ -1.88
MSH6P52701 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.31□□□□□ -1.88
MSH6P52701 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.31□□□□□ -1.88
MSH6P52701 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
MSH6P52701 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.31□□□□□ -1.88
MSH6P52701 AC079148.1-201ENST00000565944 819 ntBASIC3.31□□□□□ -1.88
MSH6P52701 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.31□□□□□ -1.88
MSH6P52701 AC105429.2-201ENST00000610567 517 ntBASIC3.31□□□□□ -1.88
MSH6P52701 AC018926.3-201ENST00000618841 406 ntBASIC3.31□□□□□ -1.88
MSH6P52701 AL512643.1-201ENST00000635735 524 ntBASIC3.31□□□□□ -1.88
MSH6P52701 AC017104.5-201ENST00000637647 639 ntBASIC3.31□□□□□ -1.88
MSH6P52701 AC091152.2-201ENST00000591628 2569 ntBASIC3.31□□□□□ -1.88
MSH6P52701 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSH6P52701 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSH6P52701 RNU6-1339P-201ENST00000363574 91 ntBASIC3.3□□□□□ -1.88
MSH6P52701 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH6P52701 RNU6-1293P-201ENST00000384077 107 ntBASIC3.3□□□□□ -1.88
MSH6P52701 SNORA64-201ENST00000384674 134 ntBASIC3.3□□□□□ -1.88
MSH6P52701 PRRC2CP1-201ENST00000404428 159 ntBASIC3.3□□□□□ -1.88
MSH6P52701 HSPE1P26-201ENST00000405341 275 ntBASIC3.3□□□□□ -1.88
MSH6P52701 RN7SKP140-201ENST00000411196 284 ntBASIC3.3□□□□□ -1.88
MSH6P52701 AC010881.1-201ENST00000433830 235 ntBASIC3.3□□□□□ -1.88
MSH6P52701 NPM1P49-201ENST00000448027 714 ntBASIC3.3□□□□□ -1.88
MSH6P52701 GSTA11P-201ENST00000452866 669 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms