Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AP001784.1-201ENST00000624107 428 ntBASIC3.39□□□□□ -1.87
HOXA1P49639 AC068880.5-201ENST00000624331 290 ntBASIC3.39□□□□□ -1.87
HOXA1P49639 AC140479.6-201ENST00000633535 357 ntBASIC3.39□□□□□ -1.87
HOXA1P49639 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA1P49639 OR5AK4P-201ENST00000635912 903 ntBASIC3.39□□□□□ -1.87
HOXA1P49639 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HOXA1P49639 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
HOXA1P49639 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
HOXA1P49639 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
HOXA1P49639 MTND5P33-201ENST00000571250 1450 ntBASIC3.39□□□□□ -1.87
HOXA1P49639 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA1P49639 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HOXA1P49639 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA1P49639 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA1P49639 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA1P49639 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXA1P49639 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA1P49639 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA1P49639 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA1P49639 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA1P49639 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA1P49639 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA1P49639 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA1P49639 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA1P49639 MIR124-3-201ENST00000384866 87 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA1P49639 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA1P49639 RNA5SP56-201ENST00000410277 118 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 RNU2-37P-201ENST00000410695 177 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 TMSB10P2-201ENST00000416049 131 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC002075.2-201ENST00000425207 252 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA1P49639 NEK4P1-201ENST00000433383 879 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 LYPLA1P1-201ENST00000434514 622 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 RPL23AP46-201ENST00000438548 490 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA1P49639 AL590399.6-201ENST00000446396 307 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 SNRPFP4-201ENST00000456366 242 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA1P49639 SNORD108-201ENST00000459332 71 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC013356.1-201ENST00000489027 564 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC020893.1-201ENST00000502452 580 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC107401.1-201ENST00000503426 685 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 TMEM248P1-201ENST00000510579 951 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC017037.2-201ENST00000513850 890 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AP003497.1-201ENST00000528472 562 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 OR5D17P-201ENST00000531492 978 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HOXA1P49639 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA1P49639 AC008011.1-201ENST00000545989 227 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA1P49639 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA1P49639 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA1P49639 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA1P49639 AC107954.1-201ENST00000565906 727 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA1P49639 MIR4425-201ENST00000580572 84 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC060771.1-201ENST00000582031 164 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 RN7SL690P-201ENST00000582087 240 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 MIR4480-201ENST00000582492 71 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC113403.1-201ENST00000604910 193 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AL161616.1-201ENST00000611867 286 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC064801.1-201ENST00000612025 407 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 MIR6780A-201ENST00000615089 68 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC138649.3-201ENST00000622154 254 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 AC112204.3-201ENST00000623822 332 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA1P49639 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HOXA1P49639 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA1P49639 SRP72P2-201ENST00000344851 1979 ntBASIC3.38□□□□□ -1.87
HOXA1P49639 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA1P49639 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
HOXA1P49639 AC005832.2-201ENST00000538921 1430 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 NMD3P1-201ENST00000439704 1488 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 GNG5P1-201ENST00000255500 204 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 MIR331-201ENST00000362302 94 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
HOXA1P49639 Y_RNA.582-201ENST00000391023 95 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 SNORD115.1-201ENST00000391109 76 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 RN7SKP235-201ENST00000410662 305 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA1P49639 AC019097.1-201ENST00000424783 735 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 OR2B8P-201ENST00000432841 938 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC009961.2-201ENST00000435771 251 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 SETP5-201ENST00000437270 562 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC073614.1-201ENST00000438690 650 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA1P49639 DNAJC19P4-201ENST00000440115 345 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA1P49639 Z95327.1-201ENST00000446082 482 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 PHBP16-201ENST00000446318 950 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC093899.1-201ENST00000457984 376 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 RPL7P15-201ENST00000461190 712 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 HMGB1P25-201ENST00000468402 607 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 RPS23P1-201ENST00000491662 432 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 RPL9P6-201ENST00000492764 598 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA1P49639 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.37□□□□□ -1.87
HOXA1P49639 ARL2BPP6-201ENST00000512757 439 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC010265.1-201ENST00000513509 211 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms