Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 MRPS18BP2-201ENST00000434310 759 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.28□□□□□ -1.88
SOX3P41225 AC002381.1-201ENST00000447049 280 ntBASIC3.28□□□□□ -1.88
SOX3P41225 snoU109.4-201ENST00000458953 143 ntBASIC3.28□□□□□ -1.88
SOX3P41225 HMGB1P25-201ENST00000468402 607 ntBASIC3.28□□□□□ -1.88
SOX3P41225 SETP11-201ENST00000473027 690 ntBASIC3.28□□□□□ -1.88
SOX3P41225 RN7SL293P-201ENST00000481765 281 ntBASIC3.28□□□□□ -1.88
SOX3P41225 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
SOX3P41225 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 AC024589.1-201ENST00000512207 263 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.28□□□□□ -1.88
SOX3P41225 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 OR6C7P-201ENST00000547875 934 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.28□□□□□ -1.88
SOX3P41225 EEF1B2P4-201ENST00000551398 348 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.28□□□□□ -1.88
SOX3P41225 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.28□□□□□ -1.88
SOX3P41225 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 AC010620.1-201ENST00000601088 1102 ntBASIC3.28□□□□□ -1.88
SOX3P41225 MTCYBP22-201ENST00000603788 447 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC090186.1-201ENST00000605991 572 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC106028.5-201ENST00000610332 395 ntBASIC3.28□□□□□ -1.88
SOX3P41225 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC015967.1-201ENST00000619893 476 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC091931.1-201ENST00000623488 728 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC004777.1-201ENST00000624317 287 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC007494.3-201ENST00000624660 743 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC092192.1-201ENST00000633154 1018 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC244258.1-201ENST00000637553 1071 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC006927.3-201ENST00000638789 384 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AL732372.2-225ENST00000642124 456 ntBASIC3.28□□□□□ -1.88
SOX3P41225 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 PWAR6-201ENST00000552334 4618 ntBASIC3.28□□□□□ -1.88
SOX3P41225 MTCO1P12-201ENST00000414273 1543 ntBASIC3.28□□□□□ -1.88
SOX3P41225 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 AC066616.2-201ENST00000559334 1481 ntBASIC3.28□□□□□ -1.88
SOX3P41225 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SOX3P41225 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SOX3P41225 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
SOX3P41225 RNU6-28P-201ENST00000362378 107 ntBASIC3.27□□□□□ -1.89
SOX3P41225 RNU6-289P-201ENST00000364093 107 ntBASIC3.27□□□□□ -1.89
SOX3P41225 RNU6-660P-201ENST00000364566 109 ntBASIC3.27□□□□□ -1.89
SOX3P41225 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 MIR320C1-201ENST00000408566 88 ntBASIC3.27□□□□□ -1.89
SOX3P41225 RN7SKP266-201ENST00000410232 287 ntBASIC3.27□□□□□ -1.89
SOX3P41225 RNU4-78P-201ENST00000410940 126 ntBASIC3.27□□□□□ -1.89
SOX3P41225 CRYBB2P1-203ENST00000415709 538 ntBASIC3.27□□□□□ -1.89
SOX3P41225 Z99497.1-201ENST00000421282 135 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.27□□□□□ -1.89
SOX3P41225 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 AC017083.1-201ENST00000428093 483 ntBASIC3.27□□□□□ -1.89
SOX3P41225 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.27□□□□□ -1.89
SOX3P41225 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.27□□□□□ -1.89
SOX3P41225 CYCSP43-201ENST00000438233 310 ntBASIC3.27□□□□□ -1.89
SOX3P41225 ISCA1P2-201ENST00000438679 421 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AC092641.1-201ENST00000440229 772 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.27□□□□□ -1.89
SOX3P41225 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.27□□□□□ -1.89
SOX3P41225 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 AC006539.3-201ENST00000454258 129 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AC010401.1-201ENST00000463867 348 ntBASIC3.27□□□□□ -1.89
SOX3P41225 RPL30P9-201ENST00000465586 330 ntBASIC3.27□□□□□ -1.89
SOX3P41225 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.27□□□□□ -1.89
SOX3P41225 AC024224.1-201ENST00000538284 609 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.27□□□□□ -1.89
SOX3P41225 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.27□□□□□ -1.89
SOX3P41225 AC012435.1-202ENST00000568772 240 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 AL353997.4-201ENST00000586196 166 ntBASIC3.27□□□□□ -1.89
SOX3P41225 BBIP1P1-201ENST00000602999 279 ntBASIC3.27□□□□□ -1.89
SOX3P41225 Z94722.1-201ENST00000604328 474 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AC069200.1-201ENST00000609511 323 ntBASIC3.27□□□□□ -1.89
SOX3P41225 MIR7851-201ENST00000610611 160 ntBASIC3.27□□□□□ -1.89
SOX3P41225 MIR7844-201ENST00000616161 122 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AL596245.1-201ENST00000618994 362 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AC048344.4-201ENST00000619744 527 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AP003355.3-201ENST00000623465 114 ntBASIC3.27□□□□□ -1.89
SOX3P41225 AC009039.2-201ENST00000624524 529 ntBASIC3.27□□□□□ -1.89
SOX3P41225 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 AC127502.3-201ENST00000636170 1206 ntBASIC3.27□□□□□ -1.89
SOX3P41225 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SOX3P41225 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.27□□□□□ -1.89
SOX3P41225 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SOX3P41225 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
SOX3P41225 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SOX3P41225 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
SOX3P41225 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SOX3P41225 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.26□□□□□ -1.89
SOX3P41225 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.26□□□□□ -1.89
SOX3P41225 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms