Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.24□□□□□ -1.41
COL9A1P20849 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-37P-201ENST00000362692 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-11P-201ENST00000364234 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RN7SKP227-201ENST00000364445 330 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-7-201ENST00000364784 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-8-201ENST00000365467 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 Y_RNA.357-201ENST00000365487 109 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-25P-201ENST00000383873 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 SNORD116-14-201ENST00000383894 92 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-1-201ENST00000383898 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 SNORD116-17-201ENST00000383929 92 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-36P-201ENST00000384172 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-4P-201ENST00000384205 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-5P-201ENST00000384238 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-3P-201ENST00000384314 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-16P-201ENST00000384385 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 SNORD116-15-201ENST00000384445 92 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 SNORD116-20-201ENST00000384529 92 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-15P-201ENST00000384534 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-2-201ENST00000384627 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-29P-201ENST00000384637 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 SNORD116-19-201ENST00000384729 92 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-9-201ENST00000384776 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 MIR192-201ENST00000384915 110 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 MIR569-201ENST00000385228 96 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 EIF4EBP2P3-201ENST00000403144 334 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RPL23AP26-201ENST00000412728 464 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 AL390729.2-201ENST00000416137 156 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 RPL35AP31-201ENST00000418340 337 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.24□□□□□ -1.41
COL9A1P20849 HIGD1AP2-201ENST00000446367 280 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 FTLP8-201ENST00000446770 267 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 UQCRBP2-201ENST00000447827 297 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC6.24□□□□□ -1.41
COL9A1P20849 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC6.24□□□□□ -1.41
COL9A1P20849 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC6.24□□□□□ -1.41
COL9A1P20849 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC6.24□□□□□ -1.41
COL9A1P20849 RNU6-6P-201ENST00000606623 107 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.24□□□□□ -1.41
COL9A1P20849 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
COL9A1P20849 AC010332.2-201ENST00000613083 1904 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
COL9A1P20849 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.24□□□□□ -1.41
COL9A1P20849 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.24□□□□□ -1.41
COL9A1P20849 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.24□□□□□ -1.41
COL9A1P20849 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.24□□□□□ -1.41
COL9A1P20849 AC024651.2-201ENST00000562480 2098 ntBASIC6.24□□□□□ -1.41
COL9A1P20849 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL9A1P20849 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.23□□□□□ -1.41
COL9A1P20849 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.23□□□□□ -1.41
COL9A1P20849 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.23□□□□□ -1.41
COL9A1P20849 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
COL9A1P20849 Y_RNA.23-201ENST00000362496 106 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 Y_RNA.136-201ENST00000363444 102 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 RNU4-84P-201ENST00000364200 139 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 SNORA70.2-201ENST00000364506 135 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 SNORA40.19-201ENST00000390846 128 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 RNU6-821P-201ENST00000390995 107 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 AL357139.1-201ENST00000407792 426 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 TRAPPC2P5-201ENST00000426293 308 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.23□□□□□ -1.41
COL9A1P20849 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC6.23□□□□□ -1.41
COL9A1P20849 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC6.23□□□□□ -1.41
COL9A1P20849 RN7SL57P-201ENST00000493687 290 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC6.23□□□□□ -1.41
COL9A1P20849 RNA5SP170-201ENST00000517150 101 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 AC018442.3-201ENST00000523025 183 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC6.23□□□□□ -1.41
COL9A1P20849 TRAV37-201ENST00000553906 342 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 AC119403.2-201ENST00000590960 598 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 AL133393.1-201ENST00000603277 287 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 AL445647.2-201ENST00000615170 130 ntBASIC6.23□□□□□ -1.41
COL9A1P20849 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC6.23□□□□□ -1.41
COL9A1P20849 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
COL9A1P20849 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
COL9A1P20849 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC6.23□□□□□ -1.41
COL9A1P20849 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL9A1P20849 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.23□□□□□ -1.41
COL9A1P20849 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms