Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 TIMM9P1-201ENST00000436122 256 ntBASIC5.56□□□□□ -1.52
LIG1P18858 AL138799.3-201ENST00000438968 350 ntBASIC5.56□□□□□ -1.52
LIG1P18858 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 KNOP1P3-201ENST00000446933 426 ntBASIC5.56□□□□□ -1.52
LIG1P18858 NDUFS5P3-201ENST00000450668 321 ntBASIC5.56□□□□□ -1.52
LIG1P18858 CYCSP34-201ENST00000458172 304 ntBASIC5.56□□□□□ -1.52
LIG1P18858 Y_RNA.635-201ENST00000459041 101 ntBASIC5.56□□□□□ -1.52
LIG1P18858 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC5.56□□□□□ -1.52
LIG1P18858 COX6B1P5-201ENST00000509843 249 ntBASIC5.56□□□□□ -1.52
LIG1P18858 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC5.56□□□□□ -1.52
LIG1P18858 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG1P18858 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC5.56□□□□□ -1.52
LIG1P18858 RPL7P20-201ENST00000520308 745 ntBASIC5.56□□□□□ -1.52
LIG1P18858 AL163153.1-201ENST00000554223 283 ntBASIC5.56□□□□□ -1.52
LIG1P18858 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 RPL21P12-201ENST00000559810 515 ntBASIC5.56□□□□□ -1.52
LIG1P18858 RN7SL52P-201ENST00000584271 284 ntBASIC5.56□□□□□ -1.52
LIG1P18858 AC124312.5-201ENST00000604451 268 ntBASIC5.56□□□□□ -1.52
LIG1P18858 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 MTND4LP32-201ENST00000636111 270 ntBASIC5.56□□□□□ -1.52
LIG1P18858 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 MTCO1P12-201ENST00000414273 1543 ntBASIC5.56□□□□□ -1.52
LIG1P18858 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LIG1P18858 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIG1P18858 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIG1P18858 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIG1P18858 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
LIG1P18858 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG1P18858 AC011460.1-201ENST00000636268 1834 ntBASIC5.55□□□□□ -1.52
LIG1P18858 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.55□□□□□ -1.52
LIG1P18858 AC130650.2-201ENST00000618736 2403 ntBASIC5.55□□□□□ -1.52
LIG1P18858 IRF5P1-201ENST00000504852 2164 ntBASIC5.55□□□□□ -1.52
LIG1P18858 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG1P18858 AC067945.1-201ENST00000342609 618 ntBASIC5.55□□□□□ -1.52
LIG1P18858 RNU6-522P-201ENST00000364497 107 ntBASIC5.55□□□□□ -1.52
LIG1P18858 Y_RNA.339-201ENST00000365325 102 ntBASIC5.55□□□□□ -1.52
LIG1P18858 SNORA51.8-201ENST00000384234 132 ntBASIC5.55□□□□□ -1.52
LIG1P18858 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LIG1P18858 U3.20-201ENST00000390909 217 ntBASIC5.55□□□□□ -1.52
LIG1P18858 RNY4P36-201ENST00000391116 96 ntBASIC5.55□□□□□ -1.52
LIG1P18858 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG1P18858 RNA5SP345-201ENST00000410646 108 ntBASIC5.55□□□□□ -1.52
LIG1P18858 AL358176.2-201ENST00000425769 204 ntBASIC5.55□□□□□ -1.52
LIG1P18858 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG1P18858 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.55□□□□□ -1.52
LIG1P18858 OR4K11P-201ENST00000431829 904 ntBASIC5.55□□□□□ -1.52
LIG1P18858 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.55□□□□□ -1.52
LIG1P18858 AC108059.2-201ENST00000434626 151 ntBASIC5.55□□□□□ -1.52
LIG1P18858 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG1P18858 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG1P18858 ST13P14-201ENST00000474095 734 ntBASIC5.55□□□□□ -1.52
LIG1P18858 RPL23AP11-201ENST00000475260 469 ntBASIC5.55□□□□□ -1.52
LIG1P18858 RN7SL319P-201ENST00000480656 221 ntBASIC5.55□□□□□ -1.52
LIG1P18858 TAF8-207ENST00000482432 556 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG1P18858 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LIG1P18858 SRP72-202ENST00000504757 745 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG1P18858 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG1P18858 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.55□□□□□ -1.52
LIG1P18858 RN7SKP46-201ENST00000515942 234 ntBASIC5.55□□□□□ -1.52
LIG1P18858 RNA5SP43-201ENST00000516559 110 ntBASIC5.55□□□□□ -1.52
LIG1P18858 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG1P18858 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG1P18858 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG1P18858 OR4K8P-201ENST00000578842 1048 ntBASIC5.55□□□□□ -1.52
LIG1P18858 AC060771.1-201ENST00000582031 164 ntBASIC5.55□□□□□ -1.52
LIG1P18858 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.55□□□□□ -1.52
LIG1P18858 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG1P18858 XIAPP1-201ENST00000603162 600 ntBASIC5.55□□□□□ -1.52
LIG1P18858 CYP2C61P-201ENST00000604072 290 ntBASIC5.55□□□□□ -1.52
LIG1P18858 AL596245.1-201ENST00000618994 362 ntBASIC5.55□□□□□ -1.52
LIG1P18858 MIR6730-201ENST00000622213 67 ntBASIC5.55□□□□□ -1.52
LIG1P18858 AC091905.4-201ENST00000623432 202 ntBASIC5.55□□□□□ -1.52
LIG1P18858 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
LIG1P18858 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.55□□□□□ -1.52
LIG1P18858 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG1P18858 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG1P18858 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LIG1P18858 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.55□□□□□ -1.52
LIG1P18858 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG1P18858 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LIG1P18858 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIG1P18858 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.54□□□□□ -1.52
LIG1P18858 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LIG1P18858 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.54□□□□□ -1.52
LIG1P18858 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIG1P18858 AC008758.3-201ENST00000507003 1829 ntBASIC5.54□□□□□ -1.52
LIG1P18858 AL139276.1-201ENST00000311910 1001 ntBASIC5.54□□□□□ -1.52
LIG1P18858 Y_RNA.22-201ENST00000362492 102 ntBASIC5.54□□□□□ -1.52
LIG1P18858 RN7SKP104-201ENST00000362605 328 ntBASIC5.54□□□□□ -1.52
LIG1P18858 Y_RNA.234-201ENST00000364409 97 ntBASIC5.54□□□□□ -1.52
LIG1P18858 SNORA22B-201ENST00000383876 138 ntBASIC5.54□□□□□ -1.52
LIG1P18858 Y_RNA.530-201ENST00000384587 101 ntBASIC5.54□□□□□ -1.52
LIG1P18858 AL592114.1-201ENST00000403842 483 ntBASIC5.54□□□□□ -1.52
LIG1P18858 RN7SKP125-201ENST00000410481 302 ntBASIC5.54□□□□□ -1.52
LIG1P18858 RNU2-39P-201ENST00000410604 198 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms