Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 Y_RNA.150-201ENST00000363562 102 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 Y_RNA.399-201ENST00000383955 105 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 RPS4XP7-201ENST00000406274 780 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 MIR1282-201ENST00000408865 101 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 RNU4-65P-201ENST00000410473 140 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AL354766.1-201ENST00000423396 542 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 BX323845.3-201ENST00000428215 527 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AL158071.1-201ENST00000430315 461 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 BX276092.4-201ENST00000452056 248 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC010350.1-201ENST00000504908 231 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC005798.1-201ENST00000513715 387 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 RNU2-69P-201ENST00000516061 100 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 RNU6-397P-201ENST00000516226 104 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 RNU6-182P-201ENST00000516970 105 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 MIR5188-201ENST00000583467 113 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 MIR4272-201ENST00000635924 64 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 CYP4F35P-202ENST00000636121 390 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 AC093671.1-201ENST00000624981 2929 ntBASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HIF3AQ9Y2N7 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC068870.1-201ENST00000563737 2455 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC108751.5-201ENST00000492880 1336 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AL359893.1-201ENST00000447628 1580 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AL451142.2-201ENST00000429076 2090 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 OR56A5-201ENST00000340110 738 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 SNORA64.1-201ENST00000362600 132 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 RNU6-715P-201ENST00000365204 103 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 SMIM11P1-201ENST00000369586 178 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 SNORA41-201ENST00000384675 132 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 Y_RNA.562-201ENST00000384695 113 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AL139039.1-201ENST00000401900 692 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 OR6E1P-201ENST00000414424 923 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AL590135.1-201ENST00000422215 156 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 RBMY1KP-201ENST00000423480 476 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 RPL23AP69-201ENST00000431134 458 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AL353997.1-201ENST00000432936 108 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 HMGB3P24-201ENST00000433260 622 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 RPS3AP12-201ENST00000443616 753 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC073910.1-201ENST00000445047 438 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC007967.1-201ENST00000455422 1159 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC087385.1-201ENST00000475062 312 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AP001086.1-201ENST00000494882 321 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 IGKV2D-36-201ENST00000518643 226 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 GSTP1P1-201ENST00000548078 319 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 CR383656.7-201ENST00000548164 174 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC079600.1-201ENST00000550326 297 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC109446.1-201ENST00000566172 220 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 MIR4310-201ENST00000582950 57 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AC104687.2-201ENST00000604442 342 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 RAC1P9-201ENST00000604990 392 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 SDR42E1P2-201ENST00000614861 481 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 SDR42E1P4-201ENST00000620894 481 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 AL512643.1-201ENST00000635735 524 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 PABPC1P7-201ENST00000413177 1513 ntBASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HIF3AQ9Y2N7 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms