Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.41□□□□□ -1.54
DDX41Q9UJV9 AL031666.3-201ENST00000609320 1006 ntBASIC5.41□□□□□ -1.54
DDX41Q9UJV9 AC006504.8-201ENST00000621046 635 ntBASIC5.41□□□□□ -1.54
DDX41Q9UJV9 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
DDX41Q9UJV9 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
DDX41Q9UJV9 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
DDX41Q9UJV9 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
DDX41Q9UJV9 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
DDX41Q9UJV9 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 NACAP2-201ENST00000318548 624 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 Y_RNA.11-201ENST00000362375 109 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 Y_RNA.86-201ENST00000363020 111 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 RNU6-1249P-201ENST00000363237 111 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 SNORD113.2-201ENST00000364166 89 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 Y_RNA.255-201ENST00000364581 97 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 RNU4-65P-201ENST00000410473 140 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 RN7SKP159-201ENST00000410657 292 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 RNA5SP107-201ENST00000411358 122 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 RPS17P8-201ENST00000434525 335 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 PMCHL2-203ENST00000457791 237 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 snoU13.3-201ENST00000459441 104 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC126389.1-201ENST00000477436 290 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AL163973.1-201ENST00000484753 577 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 RPL7P23-201ENST00000493874 747 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC093278.1-201ENST00000494700 600 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 SNORD27.1-201ENST00000516319 72 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 HMGB1P41-201ENST00000520234 440 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 FAM60DP-201ENST00000524174 632 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 OR5BN1P-201ENST00000532955 829 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 HMGB3P26-201ENST00000560051 582 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 MIR4719-201ENST00000585233 84 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC008945.2-201ENST00000606056 604 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AL158196.1-201ENST00000616786 434 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC140113.4-201ENST00000622087 222 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AC093648.1-201ENST00000623546 606 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 AL136313.1-201ENST00000624804 202 ntBASIC5.4□□□□□ -1.54
DDX41Q9UJV9 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.4□□□□□ -1.54
DDX41Q9UJV9 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
DDX41Q9UJV9 AL442639.1-201ENST00000625030 1899 ntBASIC5.4□□□□□ -1.55
DDX41Q9UJV9 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
DDX41Q9UJV9 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
DDX41Q9UJV9 AC090229.1-201ENST00000590983 1609 ntBASIC5.4□□□□□ -1.55
DDX41Q9UJV9 DDX10P1-201ENST00000448545 1933 ntBASIC5.4□□□□□ -1.55
DDX41Q9UJV9 MTND4P29-201ENST00000503122 1372 ntBASIC5.4□□□□□ -1.55
DDX41Q9UJV9 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AC073343.1-201ENST00000328239 651 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 RNU6-511P-201ENST00000363496 107 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 RNU6-996P-201ENST00000365438 107 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 Y_RNA.367-201ENST00000365544 101 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AL136372.1-201ENST00000403060 228 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 RNU2-39P-201ENST00000410604 198 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 OR2AS1P-201ENST00000427827 319 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AC091390.1-201ENST00000433904 331 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 SNORD97-201ENST00000459187 142 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 NIP7P2-201ENST00000485801 544 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AC026801.2-201ENST00000515352 425 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 RNU1-6P-201ENST00000516290 144 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 RNU6-64P-201ENST00000517119 105 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AC011712.1-201ENST00000588959 234 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AC010591.1-201ENST00000603941 649 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 AC006020.1-201ENST00000420179 1854 ntBASIC5.39□□□□□ -1.55
DDX41Q9UJV9 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.39□□□□□ -1.55
DDX41Q9UJV9 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
DDX41Q9UJV9 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.38□□□□□ -1.55
DDX41Q9UJV9 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
DDX41Q9UJV9 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
DDX41Q9UJV9 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms