Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 Y_RNA.25-201ENST00000362528 102 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 MIR491-201ENST00000384877 84 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 SNRPEP2-201ENST00000397592 279 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 RNU4-22P-201ENST00000411058 166 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 RNU2-71P-201ENST00000411395 189 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 HMGN2P20-201ENST00000437531 273 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 RPS3AP12-201ENST00000443616 753 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 RFC5P1-201ENST00000454419 874 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 RPS27AP1-201ENST00000475545 471 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC068724.1-201ENST00000487100 792 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 RN7SL633P-201ENST00000488974 297 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 OR2A20P-203ENST00000498397 1268 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC026427.2-201ENST00000506228 536 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 MTCYBP16-201ENST00000509187 1129 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 RNU6-1225P-201ENST00000516336 65 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC093331.1-201ENST00000521474 169 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 OR4P1P-201ENST00000530808 1136 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AL845331.3-202ENST00000562856 261 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC087481.2-201ENST00000565492 330 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 MIR3200-201ENST00000580767 85 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC011458.1-201ENST00000604034 617 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC128687.1-201ENST00000605304 619 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC023158.2-201ENST00000614876 543 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AL391262.2-201ENST00000622466 494 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 NUP58P1-201ENST00000502546 1738 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AL672296.1-201ENST00000427780 2158 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 AC107982.1-201ENST00000507171 1300 ntBASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS54Q9P1Q0 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AC004925.1-201ENST00000624256 2706 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 ZNF29P-201ENST00000225587 168 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 SNORA9-201ENST00000384215 133 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AL450338.1-201ENST00000407987 512 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AC004854.1-201ENST00000440356 349 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AL031313.1-201ENST00000448435 256 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AL009048.1-201ENST00000450437 298 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 HMGB1P15-201ENST00000453854 435 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 KLRA1P-201ENST00000503499 986 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AC126177.3-201ENST00000551839 688 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AL390838.2-201ENST00000602394 274 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AC015871.2-201ENST00000603605 948 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 MTND3P19-201ENST00000603825 345 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AL035411.2-201ENST00000604022 421 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AL162274.2-201ENST00000614406 332 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 GDI2P1-201ENST00000429312 1336 ntBASIC3.42□□□□□ -1.86
VPS54Q9P1Q0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 AL138885.1-201ENST00000405921 675 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 MTCO3P12-201ENST00000416718 547 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 DUTP6-201ENST00000425573 462 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 AL589880.1-201ENST00000448271 287 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 RPL21P41-201ENST00000459863 264 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 AC004062.1-201ENST00000509926 645 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 AC008837.2-201ENST00000513076 418 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 OR5G4P-201ENST00000525251 760 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 MIR4325-201ENST00000583049 90 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 BNIP3P22-201ENST00000593399 556 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms