Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TTC28Q96AY4 OR5AQ1P-202ENST00000641257 1534 ntBASIC1.92□□□□□ -2.1
TTC28Q96AY4 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
TTC28Q96AY4 TMEM248P1-201ENST00000510579 951 ntBASIC1.92□□□□□ -2.1
TTC28Q96AY4 AC090281.1-201ENST00000523019 276 ntBASIC1.92□□□□□ -2.1
TTC28Q96AY4 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.92□□□□□ -2.1
TTC28Q96AY4 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC1.92□□□□□ -2.1
TTC28Q96AY4 MIR5089-201ENST00000580047 84 ntBASIC1.92□□□□□ -2.1
TTC28Q96AY4 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.92□□□□□ -2.1
TTC28Q96AY4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC1.92□□□□□ -2.1
TTC28Q96AY4 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC1.92□□□□□ -2.1
TTC28Q96AY4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
TTC28Q96AY4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
TTC28Q96AY4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 AC093311.1-201ENST00000506586 2021 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
TTC28Q96AY4 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
TTC28Q96AY4 AL136133.1-201ENST00000413694 376 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 AC011979.1-201ENST00000472300 483 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 AL133216.2-202ENST00000634512 349 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 XKRY2-202ENST00000623874 1581 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 XKRY-202ENST00000624960 1581 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 RNU1-51P-201ENST00000365345 176 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 snoU109.4-201ENST00000458953 143 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 RPL31P41-201ENST00000477967 372 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC1.91□□□□□ -2.1
TTC28Q96AY4 FAM106DP-201ENST00000586416 501 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 AC006116.7-201ENST00000590141 756 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 AL008729.2-201ENST00000606393 473 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 AC010678.1-201ENST00000614118 713 ntBASIC1.91□□□□□ -2.1
TTC28Q96AY4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.9□□□□□ -2.1
TTC28Q96AY4 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
TTC28Q96AY4 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 AL589765.3-201ENST00000446084 462 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 TXNP6-201ENST00000510190 310 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 7SK.7-201ENST00000603504 247 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 AC016727.2-201ENST00000603988 621 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 AC006023.2-201ENST00000609916 167 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.9□□□□□ -2.11
TTC28Q96AY4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.11
TTC28Q96AY4 RNU2-6P-201ENST00000411404 190 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 AC093151.1-201ENST00000427711 313 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 SEPT7P3-201ENST00000455017 621 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 RN7SKP49-201ENST00000516675 260 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 HMGB1P41-201ENST00000520234 440 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 CYP3A51P-201ENST00000633513 256 ntBASIC1.9□□□□□ -2.11
TTC28Q96AY4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
TTC28Q96AY4 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 AC114801.2-201ENST00000503825 781 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 CBX3P4-201ENST00000538909 354 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 AC073387.2-201ENST00000604797 784 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 AL627230.5-201ENST00000619807 58 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 AP001486.2-201ENST00000561652 5113 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 XIST-201ENST00000416330 750 ntTSL 2 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 PTP4A1P6-201ENST00000531034 478 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 AC015911.5-201ENST00000587076 451 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 AC008687.2-201ENST00000597865 520 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.89□□□□□ -2.11
TTC28Q96AY4 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.89□□□□□ -2.11
TTC28Q96AY4 OR4G11P-202ENST00000642116 1414 ntBASIC1.88□□□□□ -2.11
TTC28Q96AY4 SET-203ENST00000372688 801 ntTSL 2 BASIC1.88□□□□□ -2.11
TTC28Q96AY4 SSR1P1-201ENST00000407630 814 ntBASIC1.88□□□□□ -2.11
TTC28Q96AY4 MIR1294-201ENST00000408503 142 ntBASIC1.88□□□□□ -2.11
TTC28Q96AY4 AC091544.1-201ENST00000484702 348 ntBASIC1.88□□□□□ -2.11
TTC28Q96AY4 RNU6-1223P-201ENST00000517124 104 ntBASIC1.88□□□□□ -2.11
TTC28Q96AY4 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC1.88□□□□□ -2.11
TTC28Q96AY4 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC1.88□□□□□ -2.11
TTC28Q96AY4 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.88□□□□□ -2.11
TTC28Q96AY4 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC1.88□□□□□ -2.11
TTC28Q96AY4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.88□□□□□ -2.11
TTC28Q96AY4 AL021368.2-201ENST00000606125 5352 ntBASIC1.88□□□□□ -2.11
TTC28Q96AY4 RNU4-41P-201ENST00000364426 143 ntBASIC1.88□□□□□ -2.11
TTC28Q96AY4 Y_RNA.433-201ENST00000384089 102 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms