Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 RNU6-50P-201ENST00000362356 103 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 Y_RNA.61-201ENST00000362835 102 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 SNORD81.2-201ENST00000365153 76 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 Y_RNA.373-201ENST00000365600 103 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 MIR191-201ENST00000384873 92 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 RPL32P23-201ENST00000397237 405 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AL592291.1-201ENST00000403830 352 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AL139805.1-201ENST00000407837 289 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AL160275.3-201ENST00000423876 471 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 RPS15AP27-201ENST00000449183 343 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC005077.1-201ENST00000449226 375 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC083982.1-201ENST00000485679 344 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 RPL37P23-201ENST00000492641 294 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC025445.1-201ENST00000502728 300 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 CCDC34P1-201ENST00000507441 517 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC111000.3-201ENST00000508057 576 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 FAM206BP-201ENST00000510179 541 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 RNA5SP92-201ENST00000516437 110 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 RNU6-1256P-201ENST00000516539 103 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 OR5D17P-201ENST00000531492 978 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC096996.1-201ENST00000563813 325 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 MIR744-201ENST00000578242 98 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 MIR5583-1-201ENST00000580941 59 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 MIR5010-201ENST00000582846 120 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 C8orf59P2-201ENST00000603441 271 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC008814.1-201ENST00000603797 406 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AL592436.1-201ENST00000605135 558 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AL022345.1-201ENST00000607292 135 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 AC126915.2-201ENST00000610957 190 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 U2.17-201ENST00000611454 95 ntBASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLRN3Q8NCR9 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 UBE2L2-201ENST00000254302 429 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RNU1-20P-201ENST00000363314 162 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AL590704.1-201ENST00000402856 794 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RPL7P10-201ENST00000417407 739 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AC004552.1-201ENST00000419089 348 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 USP9YP20-201ENST00000419224 558 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 PDCL2P1-201ENST00000419302 352 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 MTND4P28-201ENST00000426217 387 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 FTH1P6-201ENST00000430768 320 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 KNOP1P3-201ENST00000446933 426 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RPL35AP28-201ENST00000459730 331 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RN7SL39P-201ENST00000462264 297 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AC104339.1-201ENST00000465478 348 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RPS26P3-201ENST00000470205 348 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AC090543.2-201ENST00000483963 348 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AC004057.1-201ENST00000485827 348 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RN7SL814P-201ENST00000487715 300 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RPS15AP34-201ENST00000487776 387 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AP001086.1-201ENST00000494882 321 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 APOOP4-201ENST00000513530 597 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 ENPP7P9-201ENST00000514456 627 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RNA5SP468-201ENST00000516782 93 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RNU6-143P-201ENST00000516942 93 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 RNA5SP291-201ENST00000517222 105 ntBASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.17□□□□□ -1.74
CLRN3Q8NCR9 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms