Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNU6-1073P-201ENST00000517182 106 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC024224.1-201ENST00000538284 609 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC126177.3-201ENST00000551839 688 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 AGGF1P5-201ENST00000567900 919 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 MIR4637-201ENST00000582405 84 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AL133393.1-201ENST00000603277 287 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC105148.1-201ENST00000604961 409 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 uc_338.1-201ENST00000612113 180 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 MIR7975-201ENST00000619350 68 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 SNORD39.4-201ENST00000620099 78 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC091925.2-201ENST00000625059 256 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC116618.1-201ENST00000634617 774 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 LRRC77P-213ENST00000637727 880 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
SKA3Q8IX90 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
SKA3Q8IX90 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SKA3Q8IX90 MTND5P19-201ENST00000424872 1794 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SKA3Q8IX90 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
SKA3Q8IX90 RNU6-1181P-201ENST00000384191 106 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 RNU2-71P-201ENST00000411395 189 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 SSR1P2-201ENST00000415208 787 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 RAD23BP2-201ENST00000416003 1207 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 ELOCP9-201ENST00000418624 239 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC012065.2-201ENST00000421295 375 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 PSMA6P3-201ENST00000428242 164 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 RPL23AP74-201ENST00000437246 471 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 HMGN2P20-201ENST00000437531 273 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 ATP5C1P1-201ENST00000441945 895 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 HSPE1P28-201ENST00000443139 211 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AL358232.1-201ENST00000448030 501 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 MTND2P19-201ENST00000449129 1012 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 RPS4XP10-201ENST00000465034 731 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 HMGB1P25-201ENST00000468402 607 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 WBP1LP4-201ENST00000505043 344 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC109445.1-201ENST00000512356 383 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 RNU6-583P-201ENST00000516012 92 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SKA3Q8IX90 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC109635.4-202ENST00000531666 412 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SKA3Q8IX90 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC090695.1-201ENST00000561269 1222 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 OR4K7P-201ENST00000580232 945 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC091057.2-201ENST00000602594 792 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 DUXAP3-201ENST00000603616 594 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 BNIP3P11-201ENST00000603878 563 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 ELOCP35-201ENST00000604289 336 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC006023.2-201ENST00000609916 167 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC025588.4-201ENST00000615802 908 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC012314.7-201ENST00000619693 93 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC110774.1-201ENST00000623567 2018 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 AC244517.1-201ENST00000606030 2086 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 API5P2-201ENST00000397055 1498 ntBASIC2.89□□□□□ -1.95
SKA3Q8IX90 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
SKA3Q8IX90 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SKA3Q8IX90 MTND4P34-201ENST00000572715 1371 ntBASIC2.88□□□□□ -1.95
SKA3Q8IX90 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.88□□□□□ -1.95
SKA3Q8IX90 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
SKA3Q8IX90 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
SKA3Q8IX90 RNU6-621P-201ENST00000364752 109 ntBASIC2.88□□□□□ -1.95
SKA3Q8IX90 Y_RNA.311-201ENST00000365068 96 ntBASIC2.88□□□□□ -1.95
SKA3Q8IX90 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SKA3Q8IX90 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SKA3Q8IX90 RNU6-878P-201ENST00000384578 110 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms