Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MIR181A1-201ENST00000385026 110 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AC110754.1-201ENST00000399740 601 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 RN7SKP167-201ENST00000411047 285 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 MTCO3P30-201ENST00000426425 670 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.22□□□□□ -1.57
SF3A1Q15459 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.22□□□□□ -1.57
SF3A1Q15459 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.22□□□□□ -1.57
SF3A1Q15459 AC010631.1-201ENST00000474150 156 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 RPL31P13-201ENST00000484151 370 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 VN1R105P-201ENST00000486595 910 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SF3A1Q15459 OR7H2P-201ENST00000513483 306 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.22□□□□□ -1.57
SF3A1Q15459 SNORA31.22-201ENST00000517204 135 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AC090572.1-201ENST00000519251 160 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AC134698.5-201ENST00000519444 336 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.22□□□□□ -1.57
SF3A1Q15459 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.22□□□□□ -1.57
SF3A1Q15459 OR4H12P-201ENST00000556269 907 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC5.22□□□□□ -1.57
SF3A1Q15459 MTATP6P3-201ENST00000581686 676 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AC105224.1-201ENST00000587055 421 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.22□□□□□ -1.57
SF3A1Q15459 RPL7P50-201ENST00000600588 727 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AL359880.1-201ENST00000621879 266 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 SRP54-214ENST00000630962 162 ntTSL 5 BASIC5.22□□□□□ -1.57
SF3A1Q15459 AC055839.1-201ENST00000634467 498 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.22□□□□□ -1.57
SF3A1Q15459 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
SF3A1Q15459 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SF3A1Q15459 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SF3A1Q15459 AC006971.1-201ENST00000407916 4486 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 PNPT1P2-201ENST00000456768 2050 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 SDAD1P1-202ENST00000524156 2051 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.57
SF3A1Q15459 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
SF3A1Q15459 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.21□□□□□ -1.57
SF3A1Q15459 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
SF3A1Q15459 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.21□□□□□ -1.57
SF3A1Q15459 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC5.21□□□□□ -1.57
SF3A1Q15459 LINC00622-201ENST00000562811 1570 ntBASIC5.21□□□□□ -1.57
SF3A1Q15459 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SF3A1Q15459 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
SF3A1Q15459 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC021146.4-201ENST00000309229 279 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 HSPE1P11-201ENST00000339579 310 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 SNORA31-201ENST00000362607 130 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 RNU6-1103P-201ENST00000384150 107 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 AC016397.1-201ENST00000412463 242 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 FAR2P2-201ENST00000413041 594 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC008850.1-201ENST00000427546 362 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 RPL7L1P10-201ENST00000427790 463 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC5.21□□□□□ -1.58
SF3A1Q15459 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC009220.1-201ENST00000451614 275 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.21□□□□□ -1.58
SF3A1Q15459 CREM-226ENST00000469949 721 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 RPS27AP1-201ENST00000475545 471 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC5.21□□□□□ -1.58
SF3A1Q15459 HMGB1P41-201ENST00000520234 440 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AP001893.2-201ENST00000526949 202 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.21□□□□□ -1.58
SF3A1Q15459 MIR4330-201ENST00000579077 105 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 AC091042.1-201ENST00000579213 173 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 RN7SL52P-201ENST00000584271 284 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.21□□□□□ -1.58
SF3A1Q15459 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.21□□□□□ -1.58
SF3A1Q15459 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SF3A1Q15459 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC5.21□□□□□ -1.58
SF3A1Q15459 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC5.21□□□□□ -1.58
SF3A1Q15459 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SF3A1Q15459 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SF3A1Q15459 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SF3A1Q15459 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.21□□□□□ -1.58
SF3A1Q15459 ZNF137P-201ENST00000456718 1920 ntBASIC5.21□□□□□ -1.58
SF3A1Q15459 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.2□□□□□ -1.58
SF3A1Q15459 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SF3A1Q15459 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SF3A1Q15459 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SF3A1Q15459 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SF3A1Q15459 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SF3A1Q15459 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SF3A1Q15459 RNU6-1284P-201ENST00000363701 100 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SF3A1Q15459 Y_RNA.409-201ENST00000383990 98 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 RNU6-641P-201ENST00000384006 107 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 MIR141-201ENST00000384975 95 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.2□□□□□ -1.58
SF3A1Q15459 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms