Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 SNORD60.2-201ENST00000516883 86 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 RNU6-835P-201ENST00000516974 104 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 AC104986.1-201ENST00000517978 436 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 AC022616.6-201ENST00000520479 119 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 AC023050.3-201ENST00000541142 333 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AC124068.1-201ENST00000563131 678 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 MIR4513-201ENST00000581077 86 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 MIR3118-1-201ENST00000581787 76 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AL138721.1-201ENST00000616756 179 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.31□□□□□ -1.72
COL4A3Q01955 TPTEP1-208ENST00000636884 213 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.31□□□□□ -1.72
COL4A3Q01955 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL4A3Q01955 AC097504.1-201ENST00000515103 2415 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A3Q01955 AC004944.1-201ENST00000517807 3059 ntBASIC4.31□□□□□ -1.72
COL4A3Q01955 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.3□□□□□ -1.72
COL4A3Q01955 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL4A3Q01955 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
COL4A3Q01955 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL4A3Q01955 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.3□□□□□ -1.72
COL4A3Q01955 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
COL4A3Q01955 AC126323.6-202ENST00000568092 3511 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.3□□□□□ -1.72
COL4A3Q01955 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.3□□□□□ -1.72
COL4A3Q01955 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 RNU1-20P-201ENST00000363314 162 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 Y_RNA.138-201ENST00000363462 102 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 RNY1P12-201ENST00000364251 105 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 SNORA32.2-201ENST00000384049 122 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 RNU1-44P-201ENST00000384453 163 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 RNU6-1158P-201ENST00000391167 107 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AC068050.1-201ENST00000394891 380 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AL162578.1-201ENST00000406202 378 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 TXNP7-201ENST00000406296 293 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.3□□□□□ -1.72
COL4A3Q01955 AC096664.2-201ENST00000411843 406 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 RAB9AP3-201ENST00000412737 573 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AC004987.3-201ENST00000413879 771 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A3Q01955 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.3□□□□□ -1.72
COL4A3Q01955 MRPL50P4-201ENST00000446432 475 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 RAB9AP1-201ENST00000449393 573 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.3□□□□□ -1.72
COL4A3Q01955 AC103851.1-201ENST00000506833 274 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
COL4A3Q01955 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.3□□□□□ -1.72
COL4A3Q01955 RNU6-277P-201ENST00000516272 106 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AC105029.1-201ENST00000520250 669 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 COX6CP8-201ENST00000522620 226 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AC022861.1-201ENST00000522981 663 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A3Q01955 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.3□□□□□ -1.72
COL4A3Q01955 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.3□□□□□ -1.72
COL4A3Q01955 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A3Q01955 BBIP1P1-201ENST00000602999 279 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AL133255.1-201ENST00000606374 441 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AL133215.3-201ENST00000609801 448 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AC078899.5-201ENST00000612475 178 ntBASIC4.3□□□□□ -1.72
COL4A3Q01955 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A3Q01955 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL4A3Q01955 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL4A3Q01955 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.3□□□□□ -1.72
COL4A3Q01955 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.3□□□□□ -1.72
COL4A3Q01955 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A3Q01955 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 RPL7P26-201ENST00000333817 754 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 SNORA20.2-201ENST00000383922 131 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 AL354719.1-201ENST00000406535 843 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC078974.1-201ENST00000411597 223 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 MTCO3P46-201ENST00000425787 232 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 AC236972.2-201ENST00000434979 310 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A3Q01955 MTCO3P2-201ENST00000457365 171 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 PABPC1P3-201ENST00000469174 459 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A3Q01955 RPS27AP1-201ENST00000475545 471 ntBASIC4.29□□□□□ -1.72
COL4A3Q01955 RPL7P42-201ENST00000481005 679 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms