Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 AC000374.1-201ENST00000434698 1745 ntBASIC5.43□□□□□ -1.54
MSX1P28360 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX1P28360 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
MSX1P28360 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX1P28360 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX1P28360 AC026523.2-201ENST00000625039 7739 ntBASIC5.42□□□□□ -1.54
MSX1P28360 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 SELENOWP1-201ENST00000322792 252 ntBASIC5.42□□□□□ -1.54
MSX1P28360 RNU4-44P-201ENST00000363050 141 ntBASIC5.42□□□□□ -1.54
MSX1P28360 RN7SKP128-201ENST00000364270 303 ntBASIC5.42□□□□□ -1.54
MSX1P28360 Y_RNA.269-201ENST00000364685 89 ntBASIC5.42□□□□□ -1.54
MSX1P28360 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 MIR1203-201ENST00000408812 85 ntBASIC5.42□□□□□ -1.54
MSX1P28360 AC092423.1-201ENST00000430165 186 ntBASIC5.42□□□□□ -1.54
MSX1P28360 RPL23AP25-201ENST00000430973 463 ntBASIC5.42□□□□□ -1.54
MSX1P28360 RN7SL269P-201ENST00000467795 305 ntBASIC5.42□□□□□ -1.54
MSX1P28360 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX1P28360 AC005798.1-201ENST00000513715 387 ntBASIC5.42□□□□□ -1.54
MSX1P28360 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX1P28360 RN7SKP288-201ENST00000516227 268 ntBASIC5.42□□□□□ -1.54
MSX1P28360 DEFB108E-201ENST00000524692 240 ntBASIC5.42□□□□□ -1.54
MSX1P28360 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX1P28360 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX1P28360 AC007225.2-201ENST00000562529 256 ntBASIC5.42□□□□□ -1.54
MSX1P28360 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX1P28360 MIR5692A1-201ENST00000580523 69 ntBASIC5.42□□□□□ -1.54
MSX1P28360 AC068790.4-201ENST00000602474 263 ntBASIC5.42□□□□□ -1.54
MSX1P28360 MIR6809-201ENST00000612189 116 ntBASIC5.42□□□□□ -1.54
MSX1P28360 uc_338.26-201ENST00000612659 160 ntBASIC5.42□□□□□ -1.54
MSX1P28360 AC005344.1-201ENST00000613391 459 ntBASIC5.42□□□□□ -1.54
MSX1P28360 AL139099.4-201ENST00000614802 114 ntBASIC5.42□□□□□ -1.54
MSX1P28360 FP236240.3-201ENST00000623061 327 ntBASIC5.42□□□□□ -1.54
MSX1P28360 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
MSX1P28360 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX1P28360 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
MSX1P28360 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 SAMMSON-213ENST00000641336 1521 ntBASIC5.42□□□□□ -1.54
MSX1P28360 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 AP005435.3-201ENST00000531260 3198 ntBASIC5.42□□□□□ -1.54
MSX1P28360 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX1P28360 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX1P28360 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.41□□□□□ -1.54
MSX1P28360 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSX1P28360 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX1P28360 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX1P28360 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX1P28360 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
MSX1P28360 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX1P28360 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
MSX1P28360 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
MSX1P28360 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
MSX1P28360 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSX1P28360 Y_RNA.277-201ENST00000364754 102 ntBASIC5.41□□□□□ -1.54
MSX1P28360 RNU6-14P-201ENST00000384630 106 ntBASIC5.41□□□□□ -1.54
MSX1P28360 MIR215-201ENST00000384858 110 ntBASIC5.41□□□□□ -1.54
MSX1P28360 MIR143-201ENST00000385300 106 ntBASIC5.41□□□□□ -1.54
MSX1P28360 MIR1298-201ENST00000408783 112 ntBASIC5.41□□□□□ -1.54
MSX1P28360 RNU6-325P-201ENST00000411132 105 ntBASIC5.41□□□□□ -1.54
MSX1P28360 RN7SKP293-201ENST00000411389 296 ntBASIC5.41□□□□□ -1.54
MSX1P28360 SDHDP6-201ENST00000414693 480 ntBASIC5.41□□□□□ -1.54
MSX1P28360 RPL21P90-201ENST00000415692 466 ntBASIC5.41□□□□□ -1.54
MSX1P28360 RPS4XP5-201ENST00000419038 768 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AC007098.1-201ENST00000420122 367 ntBASIC5.41□□□□□ -1.54
MSX1P28360 RPS15AP6-201ENST00000420703 385 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX1P28360 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.41□□□□□ -1.54
MSX1P28360 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX1P28360 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX1P28360 Z92846.1-201ENST00000456203 268 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AL136097.1-201ENST00000456945 913 ntBASIC5.41□□□□□ -1.54
MSX1P28360 TRBV5-2-201ENST00000489095 273 ntBASIC5.41□□□□□ -1.54
MSX1P28360 RPL7P23-201ENST00000493874 747 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AL136038.1-201ENST00000497246 351 ntBASIC5.41□□□□□ -1.54
MSX1P28360 RN7SL284P-201ENST00000498823 275 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX1P28360 RPS4XP20-201ENST00000505751 772 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.41□□□□□ -1.54
MSX1P28360 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC5.41□□□□□ -1.54
MSX1P28360 AC087369.1-201ENST00000520775 996 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
MSX1P28360 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX1P28360 AP002770.2-201ENST00000543613 532 ntBASIC5.41□□□□□ -1.54
MSX1P28360 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX1P28360 SULT1C2P2-201ENST00000562517 294 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
MSX1P28360 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX1P28360 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX1P28360 AC006115.2-201ENST00000596823 202 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AL034351.1-201ENST00000605288 668 ntBASIC5.41□□□□□ -1.54
MSX1P28360 RNA5SP440-201ENST00000612665 119 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AL031601.2-202ENST00000622650 282 ntBASIC5.41□□□□□ -1.54
MSX1P28360 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms