Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.23□□□□□ -1.89
SDC3O75056 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.23□□□□□ -1.89
SDC3O75056 BNIP3P40-201ENST00000596017 556 ntBASIC3.23□□□□□ -1.89
SDC3O75056 BNIP3P38-201ENST00000601117 544 ntBASIC3.23□□□□□ -1.89
SDC3O75056 BNIP3P11-201ENST00000603878 563 ntBASIC3.23□□□□□ -1.89
SDC3O75056 DUXAP10-204ENST00000612052 616 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AL355810.1-201ENST00000614629 552 ntBASIC3.23□□□□□ -1.89
SDC3O75056 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SDC3O75056 ATP5A1P2-202ENST00000616464 443 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AC022149.2-201ENST00000621061 203 ntBASIC3.23□□□□□ -1.89
SDC3O75056 AC022509.4-201ENST00000621404 572 ntBASIC3.23□□□□□ -1.89
SDC3O75056 MIR6852-201ENST00000621699 66 ntBASIC3.23□□□□□ -1.89
SDC3O75056 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.23□□□□□ -1.89
SDC3O75056 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SDC3O75056 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.23□□□□□ -1.89
SDC3O75056 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.23□□□□□ -1.89
SDC3O75056 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SDC3O75056 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SDC3O75056 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.23□□□□□ -1.89
SDC3O75056 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SDC3O75056 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.22□□□□□ -1.89
SDC3O75056 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
SDC3O75056 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC3O75056 SNRPEP3-201ENST00000338402 276 ntBASIC3.22□□□□□ -1.89
SDC3O75056 NACA3P-201ENST00000359690 648 ntBASIC3.22□□□□□ -1.89
SDC3O75056 RNU4-68P-201ENST00000364314 141 ntBASIC3.22□□□□□ -1.89
SDC3O75056 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC3O75056 RPL5P18-201ENST00000406671 891 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 COTL1P1-201ENST00000422309 375 ntBASIC3.22□□□□□ -1.89
SDC3O75056 NANOGP5-201ENST00000424456 877 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AC092648.1-201ENST00000425870 423 ntBASIC3.22□□□□□ -1.89
SDC3O75056 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.22□□□□□ -1.89
SDC3O75056 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 RSL24D1P3-201ENST00000449255 495 ntBASIC3.22□□□□□ -1.89
SDC3O75056 USP9YP34-201ENST00000453983 808 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AL445669.2-201ENST00000454425 421 ntBASIC3.22□□□□□ -1.89
SDC3O75056 PTGES3P5-201ENST00000455109 434 ntBASIC3.22□□□□□ -1.89
SDC3O75056 RPL23AP31-201ENST00000456160 467 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 snoU109.4-201ENST00000458953 143 ntBASIC3.22□□□□□ -1.89
SDC3O75056 RN7SL863P-201ENST00000462370 296 ntBASIC3.22□□□□□ -1.89
SDC3O75056 ACTG1P13-201ENST00000486987 1043 ntBASIC3.22□□□□□ -1.89
SDC3O75056 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.22□□□□□ -1.89
SDC3O75056 TPT1P8-201ENST00000510120 555 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AC010625.1-201ENST00000511296 403 ntBASIC3.22□□□□□ -1.89
SDC3O75056 SNORA70.19-201ENST00000516717 90 ntBASIC3.22□□□□□ -1.89
SDC3O75056 RPL12P22-201ENST00000519073 490 ntBASIC3.22□□□□□ -1.89
SDC3O75056 NDUFB9P3-201ENST00000521269 501 ntBASIC3.22□□□□□ -1.89
SDC3O75056 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.22□□□□□ -1.89
SDC3O75056 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.22□□□□□ -1.89
SDC3O75056 AC010198.2-201ENST00000550612 259 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AL132857.1-201ENST00000555180 708 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.22□□□□□ -1.89
SDC3O75056 AL132657.2-201ENST00000564417 358 ntBASIC3.22□□□□□ -1.89
SDC3O75056 LARP7P2-201ENST00000575306 125 ntBASIC3.22□□□□□ -1.89
SDC3O75056 FAM60BP-201ENST00000578364 658 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AC015917.1-201ENST00000579654 510 ntBASIC3.22□□□□□ -1.89
SDC3O75056 LARP7P3-201ENST00000579888 337 ntBASIC3.22□□□□□ -1.89
SDC3O75056 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC3O75056 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.22□□□□□ -1.89
SDC3O75056 BNIP3P24-201ENST00000593398 557 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AC010738.1-201ENST00000604970 987 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AC073657.2-201ENST00000605661 303 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AC106052.1-201ENST00000608029 497 ntBASIC3.22□□□□□ -1.89
SDC3O75056 VIS1.1-201ENST00000610517 203 ntBASIC3.22□□□□□ -1.89
SDC3O75056 AL390240.1-201ENST00000612950 384 ntBASIC3.22□□□□□ -1.89
SDC3O75056 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.22□□□□□ -1.89
SDC3O75056 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.22□□□□□ -1.89
SDC3O75056 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.22□□□□□ -1.89
SDC3O75056 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SDC3O75056 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.22□□□□□ -1.89
SDC3O75056 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.22□□□□□ -1.89
SDC3O75056 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC3O75056 AL136164.4-201ENST00000625013 2135 ntBASIC3.22□□□□□ -1.89
SDC3O75056 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
SDC3O75056 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SDC3O75056 AC021755.1-201ENST00000559747 1447 ntBASIC3.21□□□□□ -1.9
SDC3O75056 CR383658.2-201ENST00000547576 1525 ntBASIC3.21□□□□□ -1.9
SDC3O75056 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SDC3O75056 RNU1-70P-201ENST00000362618 164 ntBASIC3.21□□□□□ -1.9
SDC3O75056 AL590084.1-201ENST00000407885 387 ntBASIC3.21□□□□□ -1.9
SDC3O75056 RNA5SP80-201ENST00000410475 111 ntBASIC3.21□□□□□ -1.9
SDC3O75056 RNU4-47P-201ENST00000410876 114 ntBASIC3.21□□□□□ -1.9
SDC3O75056 AC126124.2-201ENST00000413542 321 ntBASIC3.21□□□□□ -1.9
SDC3O75056 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.21□□□□□ -1.9
SDC3O75056 USP9YP11-201ENST00000427537 717 ntBASIC3.21□□□□□ -1.9
SDC3O75056 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.21□□□□□ -1.9
SDC3O75056 RPL17P49-201ENST00000443728 411 ntBASIC3.21□□□□□ -1.9
SDC3O75056 RPL39P6-201ENST00000448289 150 ntBASIC3.21□□□□□ -1.9
SDC3O75056 AL009048.1-201ENST00000450437 298 ntBASIC3.21□□□□□ -1.9
SDC3O75056 RPL27AP5-201ENST00000469428 449 ntBASIC3.21□□□□□ -1.9
SDC3O75056 AC109925.1-201ENST00000478069 331 ntBASIC3.21□□□□□ -1.9
SDC3O75056 RPS3AP14-201ENST00000483907 780 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms