Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 Y_RNA.117-201ENST00000363294 101 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU4-1-201ENST00000363925 141 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU6-532P-201ENST00000384318 107 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU6-33P-201ENST00000384793 107 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 HMGB1P17-201ENST00000403495 628 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 DPH3P2-201ENST00000422618 250 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC093414.1-201ENST00000434712 514 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AF228730.2-201ENST00000438784 848 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 BTF3P6-201ENST00000448054 499 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU7-136P-201ENST00000458819 69 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RPL7L1P8-201ENST00000469911 741 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC126389.1-201ENST00000477436 290 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RN7SKP24-201ENST00000515888 284 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MIR2116-201ENST00000517221 80 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 IMMP1LP2-201ENST00000552954 492 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC016727.2-201ENST00000603988 621 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL670379.11-201ENST00000604059 253 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL670379.10-201ENST00000604330 253 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL670379.12-201ENST00000605291 253 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL670379.9-201ENST00000605428 253 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC018690.1-201ENST00000608144 626 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC108751.5-201ENST00000492880 1336 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC025125.1-201ENST00000624743 1922 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU6-1115P-201ENST00000362490 106 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 Y_RNA.80-201ENST00000362996 102 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU2-28P-201ENST00000410457 189 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC004980.3-201ENST00000447046 365 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RPL7P52-201ENST00000449200 742 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC090142.1-201ENST00000465776 462 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC021205.1-201ENST00000468797 348 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC090602.1-201ENST00000469695 252 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC068781.1-201ENST00000488231 618 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC011005.3-201ENST00000491624 395 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNY3P15-201ENST00000516297 97 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 HIGD1AP6-201ENST00000521833 279 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC123904.2-201ENST00000548059 300 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LSM3P2-201ENST00000551246 273 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CYCSP40-201ENST00000575927 294 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC023043.4-201ENST00000612081 449 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC107871.2-201ENST00000612894 502 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC019206.1-201ENST00000621938 425 ntBASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU6-1040P-201ENST00000383974 107 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU6-26P-201ENST00000383985 107 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MIR554-201ENST00000384874 96 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC112498.1-201ENST00000444401 332 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL392103.1-201ENST00000447000 198 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL354714.3-201ENST00000447284 493 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms