Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
PCDHB3Q9Y5E6 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
PCDHB3Q9Y5E6 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
PCDHB3Q9Y5E6 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.09□□□□□ -1.44
PCDHB3Q9Y5E6 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
PCDHB3Q9Y5E6 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
PCDHB3Q9Y5E6 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AOX3P-204ENST00000491025 2107 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 GTF2IP4-201ENST00000453092 2054 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 RN7SKP275-201ENST00000364626 301 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 RNA5SP478-201ENST00000364657 115 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 RNU6-817P-201ENST00000391083 104 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 RPL23AP17-201ENST00000401064 499 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 Y_RNA.597-201ENST00000410463 100 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 RNU5E-9P-201ENST00000411164 104 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 CR769767.1-201ENST00000436337 346 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AL133445.1-201ENST00000467051 452 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AC009120.1-201ENST00000493458 473 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 RPL30P11-201ENST00000495304 339 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 RNU6-1012P-201ENST00000516606 109 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 RNU2-31P-201ENST00000516954 155 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 IGKV1D-22-201ENST00000518953 324 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 AC009318.2-201ENST00000610917 651 ntBASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PCDHB3Q9Y5E6 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 Y_RNA.272-201ENST00000364696 102 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 Y_RNA.275-201ENST00000364726 110 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 Y_RNA.488-201ENST00000384403 102 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 RPL12P16-201ENST00000431098 498 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 AC094019.1-201ENST00000434678 472 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 AC092967.1-201ENST00000449016 481 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 SSXP4-201ENST00000451349 245 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 RNU7-87P-201ENST00000459343 62 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 AC010326.1-201ENST00000462726 602 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 RPL23AP65-201ENST00000475608 468 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 RN7SL369P-201ENST00000477138 299 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 MIR2355-201ENST00000517199 87 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 IGLVIV-53-201ENST00000520107 367 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 CR383656.7-201ENST00000548164 174 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 RPL7P50-201ENST00000600588 727 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 AL034351.1-201ENST00000605288 668 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 BRDTP1-201ENST00000605735 677 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 MIR6864-201ENST00000617935 70 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 AL109809.4-201ENST00000603520 2185 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 AC092747.4-201ENST00000620519 1861 ntBASIC6.07□□□□□ -1.44
PCDHB3Q9Y5E6 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.06□□□□□ -1.44
PCDHB3Q9Y5E6 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
PCDHB3Q9Y5E6 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
PCDHB3Q9Y5E6 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
PCDHB3Q9Y5E6 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.06□□□□□ -1.44
PCDHB3Q9Y5E6 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
PCDHB3Q9Y5E6 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms