Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 AP001893.2-201ENST00000526949 202 ntBASIC4.36□□□□□ -1.71
DKK3Q9UBP4 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 AL445567.2-201ENST00000618935 498 ntBASIC4.36□□□□□ -1.71
DKK3Q9UBP4 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 DUXAP9-208ENST00000622815 614 ntBASIC4.36□□□□□ -1.71
DKK3Q9UBP4 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.36□□□□□ -1.71
DKK3Q9UBP4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
DKK3Q9UBP4 CCT4P2-201ENST00000233836 1548 ntBASIC4.36□□□□□ -1.71
DKK3Q9UBP4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AP001486.2-201ENST00000561652 5113 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC016769.3-201ENST00000396562 315 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC097374.1-203ENST00000400783 485 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AL590002.1-201ENST00000406554 418 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 FCF1P10-201ENST00000407590 479 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 MTCO2P5-201ENST00000422621 426 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC233728.2-201ENST00000425348 757 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AL157831.1-201ENST00000426134 473 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 RPEP2-201ENST00000432149 701 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AL671855.1-201ENST00000446875 1203 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AP000542.1-201ENST00000448473 371 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC099563.1-201ENST00000456086 418 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 RPL35AP15-201ENST00000468042 339 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC023598.1-201ENST00000472521 361 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC041039.1-201ENST00000485656 536 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC008958.1-201ENST00000511047 682 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC104057.1-201ENST00000515547 497 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 RNU2-46P-201ENST00000517038 113 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AP003730.1-201ENST00000524605 285 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 OR5AQ1P-201ENST00000527596 927 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC107016.1-201ENST00000550463 337 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AL121579.1-201ENST00000555129 305 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 MIR3939-201ENST00000582614 106 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 IPO5P1-202ENST00000600039 287 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 CKS1BP3-201ENST00000600888 237 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC011451.2-201ENST00000604303 598 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 FAM27D1-201ENST00000612308 341 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 MIR6864-201ENST00000617935 70 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC092794.2-201ENST00000620933 563 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 USP8P1-201ENST00000494673 3183 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC027287.1-201ENST00000553115 1453 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
DKK3Q9UBP4 AC106871.1-201ENST00000568324 3102 ntBASIC4.35□□□□□ -1.71
DKK3Q9UBP4 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 AC011978.2-201ENST00000569835 2054 ntBASIC4.34□□□□□ -1.71
DKK3Q9UBP4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
DKK3Q9UBP4 RNA5SP22-201ENST00000365393 109 ntBASIC4.34□□□□□ -1.71
DKK3Q9UBP4 RNU6-1293P-201ENST00000384077 107 ntBASIC4.34□□□□□ -1.71
DKK3Q9UBP4 RNU6-114P-201ENST00000384704 105 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms