Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 Y_RNA.292-201ENST00000364904 97 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 Y_RNA.488-201ENST00000384403 102 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AL133270.1-201ENST00000402635 279 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AL136372.1-201ENST00000403060 228 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AC093106.2-201ENST00000428212 385 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AC092423.1-201ENST00000430165 186 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 TPT1P13-201ENST00000449760 499 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 RNU7-167P-201ENST00000459160 62 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 RPL21P71-201ENST00000465598 459 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 PPP1R11P1-201ENST00000486095 376 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 SRI-210ENST00000490437 570 ntTSL 2 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AC093227.2-201ENST00000589357 285 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 IGHVIII-44-202ENST00000636235 289 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 HSPA8P18-201ENST00000439846 1928 ntBASIC5.8□□□□□ -1.48
NPAS3Q8IXF0 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 HSPA8P14-201ENST00000552265 1805 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 RNU6-97P-201ENST00000363387 104 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 Y_RNA.272-201ENST00000364696 102 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 RNU6-898P-201ENST00000365627 104 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 MIR19A-201ENST00000384878 82 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 MIR551A-201ENST00000385042 96 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 RNU6-278P-201ENST00000390945 109 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC108075.1-201ENST00000424692 529 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC093414.1-201ENST00000434712 514 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AP000942.1-201ENST00000463969 747 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 MIR3691-201ENST00000578066 90 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC108706.1-201ENST00000611053 297 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 Mico1.1-201ENST00000611698 204 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.79□□□□□ -1.48
NPAS3Q8IXF0 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 MIR133B-201ENST00000362210 119 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 RNA5SP443-201ENST00000363083 132 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 RNU6-923P-201ENST00000364753 107 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 Y_RNA.458-201ENST00000384240 102 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 MIR186-201ENST00000384988 86 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AL034374.1-201ENST00000406329 351 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AC007389.2-201ENST00000434630 306 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 RPL23AP74-201ENST00000437246 471 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AC016925.1-201ENST00000458303 298 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms