Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 SCARNA15-201ENST00000607520 4325 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 RNU6-238P-201ENST00000363313 106 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 SNORD115-7-201ENST00000365306 82 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 SNORA56-201ENST00000383966 129 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 RNU6-890P-201ENST00000384121 107 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 RNU6-1226P-201ENST00000384317 107 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 RNY1P14-201ENST00000384426 108 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 RNU4-70P-201ENST00000384579 139 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 AL357515.1-201ENST00000402967 542 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 RNU2-3P-201ENST00000410144 191 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 RNA5SP113-201ENST00000410486 84 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX4Q06945 RPL6P29-201ENST00000414863 865 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX4Q06945 ATG3P1-201ENST00000419507 911 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX4Q06945 COX6CP15-201ENST00000426313 211 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX4Q06945 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX4Q06945 AC007686.1-201ENST00000488511 463 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 RNU4ATAC7P-201ENST00000516280 125 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX4Q06945 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX4Q06945 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.32□□□□□ -1.56
SOX4Q06945 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX4Q06945 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.32□□□□□ -1.56
SOX4Q06945 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX4Q06945 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.32□□□□□ -1.56
SOX4Q06945 RNA5SP439-201ENST00000617595 124 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 AL592148.3-201ENST00000608771 2646 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 CDC27P3-201ENST00000635418 1910 ntBASIC5.32□□□□□ -1.56
SOX4Q06945 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.32□□□□□ -1.56
SOX4Q06945 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SOX4Q06945 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SOX4Q06945 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SOX4Q06945 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.31□□□□□ -1.56
SOX4Q06945 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SOX4Q06945 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 NXPH1-205ENST00000602349 1953 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.31□□□□□ -1.56
SOX4Q06945 AC004656.1-201ENST00000568479 4951 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SOX4Q06945 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 DEFB109C-201ENST00000382575 264 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 DEFB109B-201ENST00000382656 264 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 Y_RNA.455-201ENST00000384230 98 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 RNU4-6P-201ENST00000410804 122 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX4Q06945 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX4Q06945 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC5.31□□□□□ -1.56
SOX4Q06945 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX4Q06945 AC234779.1-201ENST00000425910 285 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC093151.1-201ENST00000427711 313 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 HMGB1P12-201ENST00000438594 598 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC000111.2-201ENST00000448200 210 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC010733.1-201ENST00000451515 401 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.31□□□□□ -1.56
SOX4Q06945 RNU6-1218P-201ENST00000458990 108 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 RPL5P30-201ENST00000465511 891 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.31□□□□□ -1.56
SOX4Q06945 AC110794.1-201ENST00000505816 425 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC107222.1-201ENST00000510899 637 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC104057.1-201ENST00000515547 497 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 RNU6-388P-201ENST00000517012 105 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 RNU6-389P-201ENST00000517048 105 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC5.31□□□□□ -1.56
SOX4Q06945 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX4Q06945 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX4Q06945 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX4Q06945 OR11H5P-201ENST00000554039 926 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC040958.1-201ENST00000561102 201 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX4Q06945 MIR3667-201ENST00000581025 74 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 DUSP12P1-201ENST00000612874 516 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC011890.2-201ENST00000613393 294 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC004696.1-201ENST00000614345 607 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 uc_338.18-201ENST00000615451 175 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX4Q06945 AL022401.1-201ENST00000619498 108 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC025034.2-201ENST00000623264 286 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 AC092608.2-201ENST00000624427 218 ntBASIC5.31□□□□□ -1.56
SOX4Q06945 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.31□□□□□ -1.56
SOX4Q06945 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX4Q06945 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX4Q06945 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms