Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 U1.25-201ENST00000614085 162 ntBASIC5.45□□□□□ -1.54
MSX1P28360 MIR6826-201ENST00000617808 98 ntBASIC5.45□□□□□ -1.54
MSX1P28360 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.45□□□□□ -1.54
MSX1P28360 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX1P28360 PROS2P-201ENST00000474651 1951 ntBASIC5.45□□□□□ -1.54
MSX1P28360 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSX1P28360 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.45□□□□□ -1.54
MSX1P28360 Z95114.1-201ENST00000624264 14574 ntBASIC5.45□□□□□ -1.54
MSX1P28360 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX1P28360 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX1P28360 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.45□□□□□ -1.54
MSX1P28360 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSX1P28360 MSL3P1-202ENST00000440028 1468 ntBASIC5.45□□□□□ -1.54
MSX1P28360 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
MSX1P28360 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
MSX1P28360 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
MSX1P28360 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
MSX1P28360 AC083843.2-201ENST00000568248 6253 ntBASIC5.44□□□□□ -1.54
MSX1P28360 Y_RNA.54-201ENST00000362766 105 ntBASIC5.44□□□□□ -1.54
MSX1P28360 RNU1-76P-201ENST00000362903 159 ntBASIC5.44□□□□□ -1.54
MSX1P28360 RNU6-371P-201ENST00000364283 108 ntBASIC5.44□□□□□ -1.54
MSX1P28360 RNA5SP211-201ENST00000365516 117 ntBASIC5.44□□□□□ -1.54
MSX1P28360 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
MSX1P28360 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.44□□□□□ -1.54
MSX1P28360 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX1P28360 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.44□□□□□ -1.54
MSX1P28360 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC5.44□□□□□ -1.54
MSX1P28360 Y_RNA.644-201ENST00000459006 113 ntBASIC5.44□□□□□ -1.54
MSX1P28360 RPL21P41-201ENST00000459863 264 ntBASIC5.44□□□□□ -1.54
MSX1P28360 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX1P28360 VN1R105P-201ENST00000486595 910 ntBASIC5.44□□□□□ -1.54
MSX1P28360 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX1P28360 RPS17P5-201ENST00000498293 408 ntBASIC5.44□□□□□ -1.54
MSX1P28360 Y_RNA.674-201ENST00000516362 113 ntBASIC5.44□□□□□ -1.54
MSX1P28360 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.44□□□□□ -1.54
MSX1P28360 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX1P28360 AC005725.1-201ENST00000577346 2607 ntBASIC5.44□□□□□ -1.54
MSX1P28360 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX1P28360 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX1P28360 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.44□□□□□ -1.54
MSX1P28360 AL512624.1-201ENST00000613638 469 ntBASIC5.44□□□□□ -1.54
MSX1P28360 AL136228.1-201ENST00000622221 319 ntBASIC5.44□□□□□ -1.54
MSX1P28360 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX1P28360 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX1P28360 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX1P28360 IQCB2P-201ENST00000401788 1633 ntBASIC5.44□□□□□ -1.54
MSX1P28360 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX1P28360 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX1P28360 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.44□□□□□ -1.54
MSX1P28360 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
MSX1P28360 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.44□□□□□ -1.54
MSX1P28360 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
MSX1P28360 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.43□□□□□ -1.54
MSX1P28360 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX1P28360 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 RN7SKP95-201ENST00000362860 303 ntBASIC5.43□□□□□ -1.54
MSX1P28360 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.43□□□□□ -1.54
MSX1P28360 SNORA69.1-201ENST00000390904 137 ntBASIC5.43□□□□□ -1.54
MSX1P28360 RN7SKP286-201ENST00000410894 299 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AL035660.1-201ENST00000422041 222 ntBASIC5.43□□□□□ -1.54
MSX1P28360 RPL30P3-201ENST00000424262 333 ntBASIC5.43□□□□□ -1.54
MSX1P28360 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX1P28360 GAPDHP48-201ENST00000436626 961 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AP006222.1-205ENST00000450734 457 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AL445665.1-202ENST00000452436 324 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AC013470.1-201ENST00000453438 462 ntBASIC5.43□□□□□ -1.54
MSX1P28360 GEMIN2P1-201ENST00000454246 752 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AC023141.9-201ENST00000458734 412 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AL122020.1-201ENST00000472287 459 ntBASIC5.43□□□□□ -1.54
MSX1P28360 RN7SL193P-201ENST00000491708 276 ntBASIC5.43□□□□□ -1.54
MSX1P28360 NDUFB5P1-201ENST00000508134 564 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX1P28360 AC008958.1-201ENST00000511047 682 ntBASIC5.43□□□□□ -1.54
MSX1P28360 RNU6-390P-201ENST00000516259 103 ntBASIC5.43□□□□□ -1.54
MSX1P28360 RN7SKP82-201ENST00000516786 223 ntBASIC5.43□□□□□ -1.54
MSX1P28360 IGKV2-23-201ENST00000518729 323 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.43□□□□□ -1.54
MSX1P28360 GSTP1P1-201ENST00000548078 319 ntBASIC5.43□□□□□ -1.54
MSX1P28360 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC5.43□□□□□ -1.54
MSX1P28360 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX1P28360 OR1M4P-201ENST00000589199 287 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AC010620.2-201ENST00000600135 313 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX1P28360 AC006329.2-201ENST00000611491 394 ntBASIC5.43□□□□□ -1.54
MSX1P28360 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC5.43□□□□□ -1.54
MSX1P28360 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX1P28360 AL450472.1-202ENST00000637286 180 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AL049767.1-202ENST00000637826 242 ntBASIC5.43□□□□□ -1.54
MSX1P28360 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX1P28360 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.43□□□□□ -1.54
MSX1P28360 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX1P28360 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
MSX1P28360 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX1P28360 AC015799.1-201ENST00000622996 3122 ntBASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms