Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
COL8A1P27658 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
COL8A1P27658 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.16□□□□□ -1.58
COL8A1P27658 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 AL591704.1-201ENST00000432574 275 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 AC092162.1-201ENST00000432828 434 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.16□□□□□ -1.58
COL8A1P27658 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.16□□□□□ -1.58
COL8A1P27658 AC091180.1-201ENST00000462104 372 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 RPS27AP1-201ENST00000475545 471 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 PPP1R11P1-201ENST00000486095 376 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 TRAPPC2P7-201ENST00000509650 231 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.16□□□□□ -1.58
COL8A1P27658 AC007016.1-201ENST00000512110 244 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 SNORD116-28-201ENST00000516123 91 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 RNA5SP170-201ENST00000517150 101 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 AC104576.1-201ENST00000524225 88 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC5.16□□□□□ -1.58
COL8A1P27658 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.16□□□□□ -1.58
COL8A1P27658 MIR5701-3-201ENST00000578890 82 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 MIR5701-1-201ENST00000585138 82 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 RPL7P50-201ENST00000600588 727 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 AL359881.1-201ENST00000602916 267 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC5.16□□□□□ -1.58
COL8A1P27658 MIR5701-2-201ENST00000615634 82 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 uc_338.9-201ENST00000617424 182 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 AC018628.1-201ENST00000624147 3819 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 AC243829.7-201ENST00000633081 225 ntBASIC5.16□□□□□ -1.58
COL8A1P27658 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.16□□□□□ -1.58
COL8A1P27658 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
COL8A1P27658 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
COL8A1P27658 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
COL8A1P27658 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL8A1P27658 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.16□□□□□ -1.58
COL8A1P27658 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.15□□□□□ -1.58
COL8A1P27658 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.15□□□□□ -1.58
COL8A1P27658 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL8A1P27658 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL8A1P27658 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL8A1P27658 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.15□□□□□ -1.58
COL8A1P27658 AC007785.2-201ENST00000598627 1916 ntBASIC5.15□□□□□ -1.58
COL8A1P27658 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.15□□□□□ -1.58
COL8A1P27658 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.15□□□□□ -1.58
COL8A1P27658 AC007842.1-201ENST00000597336 2039 ntBASIC5.15□□□□□ -1.58
COL8A1P27658 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL8A1P27658 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL8A1P27658 RNU6-1325P-201ENST00000364905 105 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 RNU6-946P-201ENST00000383878 107 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 Y_RNA.488-201ENST00000384403 102 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AL033519.2-201ENST00000403958 392 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AC016739.1-201ENST00000405359 345 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 U3.42-201ENST00000408746 214 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 RNA5SP111-201ENST00000411386 101 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC5.15□□□□□ -1.59
COL8A1P27658 RPS11P7-201ENST00000442125 465 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 ISCUP1-201ENST00000454451 448 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AP001324.2-201ENST00000461163 319 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.15□□□□□ -1.59
COL8A1P27658 RN7SL432P-201ENST00000484057 298 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AC083795.1-201ENST00000491760 320 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 IGHVII-62-1-201ENST00000519283 235 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AC091144.1-201ENST00000519573 138 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AC100870.1-201ENST00000522035 505 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 SYF2P1-201ENST00000550658 413 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC5.15□□□□□ -1.59
COL8A1P27658 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.15□□□□□ -1.59
COL8A1P27658 RNU4ATAC-201ENST00000580972 127 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 MIR4480-201ENST00000582492 71 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AL162424.1-201ENST00000602325 221 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AL160281.1-201ENST00000605307 311 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 AL022394.1-201ENST00000606979 292 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
COL8A1P27658 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.15□□□□□ -1.59
COL8A1P27658 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL8A1P27658 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL8A1P27658 AC140479.2-201ENST00000421567 3130 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.15□□□□□ -1.59
COL8A1P27658 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL8A1P27658 IARS-213ENST00000627121 4587 ntTSL 5 BASIC5.15□□□□□ -1.59
COL8A1P27658 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.15□□□□□ -1.59
COL8A1P27658 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL8A1P27658 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL8A1P27658 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL8A1P27658 AL731532.1-201ENST00000623972 4236 ntBASIC5.15□□□□□ -1.59
COL8A1P27658 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC5.14□□□□□ -1.59
COL8A1P27658 AL731556.1-201ENST00000394628 3711 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
COL8A1P27658 AP001148.1-201ENST00000624124 2359 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms