Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.6□□□□□ -1.83
MSH3P20585 USP9YP34-201ENST00000453983 808 ntBASIC3.6□□□□□ -1.83
MSH3P20585 PABPC1P3-201ENST00000469174 459 ntBASIC3.6□□□□□ -1.83
MSH3P20585 AL049830.2-201ENST00000480072 201 ntBASIC3.6□□□□□ -1.83
MSH3P20585 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH3P20585 AC090453.1-201ENST00000495560 436 ntBASIC3.6□□□□□ -1.83
MSH3P20585 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH3P20585 SAP18P1-201ENST00000512058 390 ntBASIC3.6□□□□□ -1.83
MSH3P20585 RN7SKP18-201ENST00000516005 275 ntBASIC3.6□□□□□ -1.83
MSH3P20585 RNU1-95P-201ENST00000516357 160 ntBASIC3.6□□□□□ -1.83
MSH3P20585 RNU1-128P-201ENST00000516704 160 ntBASIC3.6□□□□□ -1.83
MSH3P20585 TRMT10BP1-201ENST00000519377 943 ntBASIC3.6□□□□□ -1.83
MSH3P20585 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.6□□□□□ -1.83
MSH3P20585 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
MSH3P20585 AC023161.2-201ENST00000551218 780 ntBASIC3.6□□□□□ -1.83
MSH3P20585 GTF2IP22-201ENST00000554443 182 ntBASIC3.6□□□□□ -1.83
MSH3P20585 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.6□□□□□ -1.83
MSH3P20585 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH3P20585 MAGOH2P-202ENST00000584384 429 ntBASIC3.6□□□□□ -1.83
MSH3P20585 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH3P20585 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH3P20585 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.6□□□□□ -1.83
MSH3P20585 AC025588.4-201ENST00000615802 908 ntBASIC3.6□□□□□ -1.83
MSH3P20585 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
MSH3P20585 AL732618.1-201ENST00000623251 301 ntBASIC3.6□□□□□ -1.83
MSH3P20585 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.6□□□□□ -1.83
MSH3P20585 AL732372.2-225ENST00000642124 456 ntBASIC3.6□□□□□ -1.83
MSH3P20585 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH3P20585 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.6□□□□□ -1.83
MSH3P20585 PWAR6-201ENST00000552334 4618 ntBASIC3.6□□□□□ -1.83
MSH3P20585 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.6□□□□□ -1.83
MSH3P20585 AL390237.1-201ENST00000404226 1415 ntBASIC3.6□□□□□ -1.83
MSH3P20585 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
MSH3P20585 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.6□□□□□ -1.83
MSH3P20585 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
MSH3P20585 MTCO1P24-201ENST00000515438 1558 ntBASIC3.59□□□□□ -1.83
MSH3P20585 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.59□□□□□ -1.83
MSH3P20585 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
MSH3P20585 AL161912.2-201ENST00000565707 3007 ntBASIC3.59□□□□□ -1.83
MSH3P20585 MTND5P3-201ENST00000438536 1800 ntBASIC3.59□□□□□ -1.83
MSH3P20585 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.59□□□□□ -1.83
MSH3P20585 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
MSH3P20585 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.59□□□□□ -1.83
MSH3P20585 RNA5SP124-201ENST00000362739 110 ntBASIC3.59□□□□□ -1.83
MSH3P20585 RNU6-283P-201ENST00000364788 107 ntBASIC3.59□□□□□ -1.83
MSH3P20585 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
MSH3P20585 MTHFD2P2-201ENST00000407725 247 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AC002075.2-201ENST00000425207 252 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.59□□□□□ -1.83
MSH3P20585 AL512649.1-201ENST00000428997 581 ntBASIC3.59□□□□□ -1.83
MSH3P20585 MRPS18BP2-201ENST00000434310 759 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AL512286.1-201ENST00000439244 400 ntBASIC3.59□□□□□ -1.83
MSH3P20585 MTCO2P7-201ENST00000446518 666 ntBASIC3.59□□□□□ -1.83
MSH3P20585 MTCO1P27-201ENST00000448269 226 ntBASIC3.59□□□□□ -1.83
MSH3P20585 ARPC3P5-201ENST00000448802 534 ntBASIC3.59□□□□□ -1.83
MSH3P20585 RPL36AP33-201ENST00000450395 310 ntBASIC3.59□□□□□ -1.83
MSH3P20585 HMGB3P30-201ENST00000457863 606 ntBASIC3.59□□□□□ -1.83
MSH3P20585 MEMO1P3-201ENST00000459811 302 ntBASIC3.59□□□□□ -1.83
MSH3P20585 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.59□□□□□ -1.83
MSH3P20585 TMED11P-201ENST00000479478 690 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AC006499.5-201ENST00000505037 514 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.59□□□□□ -1.83
MSH3P20585 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.59□□□□□ -1.83
MSH3P20585 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
MSH3P20585 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.59□□□□□ -1.83
MSH3P20585 AC024909.2-201ENST00000553035 286 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AP001004.1-201ENST00000582468 324 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AC010591.1-201ENST00000603941 649 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AL031775.1-201ENST00000607014 887 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AC107214.2-201ENST00000608204 634 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AL159169.3-201ENST00000608871 561 ntBASIC3.59□□□□□ -1.83
MSH3P20585 RNVU1-4-201ENST00000612985 164 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.59□□□□□ -1.83
MSH3P20585 AC138649.5-201ENST00000637456 137 ntBASIC3.59□□□□□ -1.83
MSH3P20585 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.59□□□□□ -1.83
MSH3P20585 AC119674.1-207ENST00000641355 633 ntBASIC3.59□□□□□ -1.83
MSH3P20585 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
MSH3P20585 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.59□□□□□ -1.83
MSH3P20585 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.59□□□□□ -1.84
MSH3P20585 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
MSH3P20585 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
MSH3P20585 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
MSH3P20585 CR383658.2-201ENST00000547576 1525 ntBASIC3.59□□□□□ -1.84
MSH3P20585 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
MSH3P20585 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
MSH3P20585 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
MSH3P20585 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
MSH3P20585 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
MSH3P20585 OTUD4P1-201ENST00000237841 3067 ntBASIC3.58□□□□□ -1.84
MSH3P20585 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
MSH3P20585 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.58□□□□□ -1.84
MSH3P20585 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSH3P20585 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.58□□□□□ -1.84
MSH3P20585 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.58□□□□□ -1.84
MSH3P20585 RNU6-952P-201ENST00000391164 108 ntBASIC3.58□□□□□ -1.84
MSH3P20585 PTMAP5-201ENST00000393073 333 ntBASIC3.58□□□□□ -1.84
MSH3P20585 AL355379.1-201ENST00000405542 640 ntBASIC3.58□□□□□ -1.84
MSH3P20585 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.58□□□□□ -1.84
MSH3P20585 ATP5A1P2-201ENST00000412323 255 ntBASIC3.58□□□□□ -1.84
MSH3P20585 RAB9AP3-201ENST00000412737 573 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms