Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC114495.1-201ENST00000441274 436 ntBASIC5.6□□□□□ -1.51
LIG1P18858 TDGF1P1-201ENST00000445734 527 ntBASIC5.6□□□□□ -1.51
LIG1P18858 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG1P18858 HMGB1P15-201ENST00000453854 435 ntBASIC5.6□□□□□ -1.51
LIG1P18858 RN7SL517P-201ENST00000462240 305 ntBASIC5.6□□□□□ -1.51
LIG1P18858 MTND4P17-201ENST00000470444 350 ntBASIC5.6□□□□□ -1.51
LIG1P18858 AC091885.1-201ENST00000506658 268 ntBASIC5.6□□□□□ -1.51
LIG1P18858 FAM206BP-201ENST00000510179 541 ntBASIC5.6□□□□□ -1.51
LIG1P18858 AC021146.1-201ENST00000511202 716 ntBASIC5.6□□□□□ -1.51
LIG1P18858 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC5.6□□□□□ -1.51
LIG1P18858 RNU6-559P-201ENST00000516151 98 ntBASIC5.6□□□□□ -1.51
LIG1P18858 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.6□□□□□ -1.51
LIG1P18858 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.6□□□□□ -1.51
LIG1P18858 DPPA3P3-201ENST00000603842 430 ntBASIC5.6□□□□□ -1.51
LIG1P18858 AL627309.6-201ENST00000606857 840 ntBASIC5.6□□□□□ -1.51
LIG1P18858 AC133644.2-201ENST00000608142 540 ntBASIC5.6□□□□□ -1.51
LIG1P18858 OR6R2P-201ENST00000609216 300 ntBASIC5.6□□□□□ -1.51
LIG1P18858 uc_338.12-201ENST00000616344 181 ntBASIC5.6□□□□□ -1.51
LIG1P18858 7SK.10-201ENST00000621414 298 ntBASIC5.6□□□□□ -1.51
LIG1P18858 AC079597.1-201ENST00000624306 508 ntBASIC5.6□□□□□ -1.51
LIG1P18858 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG1P18858 CYP3A51P-201ENST00000633513 256 ntBASIC5.6□□□□□ -1.51
LIG1P18858 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LIG1P18858 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.6□□□□□ -1.51
LIG1P18858 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.6□□□□□ -1.51
LIG1P18858 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG1P18858 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.6□□□□□ -1.51
LIG1P18858 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.6□□□□□ -1.51
LIG1P18858 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LIG1P18858 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LIG1P18858 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.59□□□□□ -1.51
LIG1P18858 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIG1P18858 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIG1P18858 AC022893.2-201ENST00000564832 3296 ntBASIC5.59□□□□□ -1.51
LIG1P18858 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIG1P18858 RNU4-20P-201ENST00000365601 151 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIG1P18858 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIG1P18858 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIG1P18858 SNORD37.1-201ENST00000390968 65 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AL357515.1-201ENST00000402967 542 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AP000580.1-201ENST00000404439 358 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC012065.2-201ENST00000421295 375 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC018630.2-202ENST00000422992 927 ntBASIC5.59□□□□□ -1.51
LIG1P18858 CHIAP3-201ENST00000423668 1133 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AL590762.4-201ENST00000425885 253 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 AC108734.1-201ENST00000439549 399 ntBASIC5.59□□□□□ -1.51
LIG1P18858 CEACAMP9-201ENST00000442990 513 ntBASIC5.59□□□□□ -1.51
LIG1P18858 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC5.59□□□□□ -1.51
LIG1P18858 RNU7-152P-201ENST00000458982 64 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC068587.1-201ENST00000483613 781 ntBASIC5.59□□□□□ -1.51
LIG1P18858 RN7SL244P-201ENST00000493405 297 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC5.59□□□□□ -1.51
LIG1P18858 HMGB3P15-201ENST00000507326 574 ntBASIC5.59□□□□□ -1.51
LIG1P18858 RNA5SP392-201ENST00000516905 112 ntBASIC5.59□□□□□ -1.51
LIG1P18858 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC5.59□□□□□ -1.51
LIG1P18858 SUMO2P20-201ENST00000520803 283 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AP003497.1-201ENST00000528472 562 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.59□□□□□ -1.51
LIG1P18858 SETP2-201ENST00000553886 926 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.59□□□□□ -1.51
LIG1P18858 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.59□□□□□ -1.51
LIG1P18858 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.59□□□□□ -1.51
LIG1P18858 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 AP001029.3-201ENST00000588063 596 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 GLUD1P4-201ENST00000590914 418 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 AC068790.3-201ENST00000602988 553 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AP001330.4-201ENST00000604350 154 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC016925.2-201ENST00000605108 242 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AC080078.3-201ENST00000605407 463 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AL627230.1-201ENST00000613077 211 ntBASIC5.59□□□□□ -1.51
LIG1P18858 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 AL049794.2-201ENST00000616301 365 ntBASIC5.59□□□□□ -1.51
LIG1P18858 AL591926.8-201ENST00000616876 211 ntBASIC5.59□□□□□ -1.51
LIG1P18858 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.59□□□□□ -1.51
LIG1P18858 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
LIG1P18858 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIG1P18858 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIG1P18858 AC004972.1-201ENST00000623934 2209 ntBASIC5.59□□□□□ -1.52
LIG1P18858 AL445487.1-201ENST00000415694 1580 ntBASIC5.59□□□□□ -1.52
LIG1P18858 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIG1P18858 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.58□□□□□ -1.52
LIG1P18858 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.58□□□□□ -1.52
LIG1P18858 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIG1P18858 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIG1P18858 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.58□□□□□ -1.52
LIG1P18858 RNU1-83P-201ENST00000363426 164 ntBASIC5.58□□□□□ -1.52
LIG1P18858 Y_RNA.133-201ENST00000363428 110 ntBASIC5.58□□□□□ -1.52
LIG1P18858 Y_RNA.301-201ENST00000364990 103 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms