Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 IGKV2D-19-201ENST00000523346 262 ntBASIC3.38□□□□□ -1.87
SNX3O60493 AC087276.1-201ENST00000529659 480 ntBASIC3.38□□□□□ -1.87
SNX3O60493 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
SNX3O60493 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.38□□□□□ -1.87
SNX3O60493 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.38□□□□□ -1.87
SNX3O60493 AC012182.1-201ENST00000570133 895 ntBASIC3.38□□□□□ -1.87
SNX3O60493 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.38□□□□□ -1.87
SNX3O60493 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.38□□□□□ -1.87
SNX3O60493 AC090616.2-202ENST00000584248 222 ntBASIC3.38□□□□□ -1.87
SNX3O60493 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.38□□□□□ -1.87
SNX3O60493 AC022916.3-201ENST00000592961 742 ntBASIC3.38□□□□□ -1.87
SNX3O60493 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.38□□□□□ -1.87
SNX3O60493 AL031176.1-201ENST00000604554 466 ntBASIC3.38□□□□□ -1.87
SNX3O60493 AC072039.2-201ENST00000608883 439 ntBASIC3.38□□□□□ -1.87
SNX3O60493 AL590282.1-201ENST00000610379 1136 ntBASIC3.38□□□□□ -1.87
SNX3O60493 MIR6867-201ENST00000610636 67 ntBASIC3.38□□□□□ -1.87
SNX3O60493 AC099778.2-201ENST00000610904 211 ntBASIC3.38□□□□□ -1.87
SNX3O60493 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.38□□□□□ -1.87
SNX3O60493 AL590099.1-201ENST00000615276 138 ntBASIC3.38□□□□□ -1.87
SNX3O60493 AL353748.2-201ENST00000622148 471 ntBASIC3.38□□□□□ -1.87
SNX3O60493 OR52H1-202ENST00000641796 1061 ntBASIC3.38□□□□□ -1.87
SNX3O60493 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SNX3O60493 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
SNX3O60493 AC008264.2-201ENST00000610193 3731 ntBASIC3.38□□□□□ -1.87
SNX3O60493 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
SNX3O60493 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SNX3O60493 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SNX3O60493 AC092326.2-201ENST00000624772 1561 ntBASIC3.38□□□□□ -1.87
SNX3O60493 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SNX3O60493 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.37□□□□□ -1.87
SNX3O60493 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SNX3O60493 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.37□□□□□ -1.87
SNX3O60493 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.37□□□□□ -1.87
SNX3O60493 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SNX3O60493 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SNX3O60493 AL161781.1-201ENST00000354277 403 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AL672167.1-206ENST00000356293 943 ntBASIC3.37□□□□□ -1.87
SNX3O60493 FRG1CP-201ENST00000358464 769 ntBASIC3.37□□□□□ -1.87
SNX3O60493 RNU6-1155P-201ENST00000363554 107 ntBASIC3.37□□□□□ -1.87
SNX3O60493 RNU6-660P-201ENST00000364566 109 ntBASIC3.37□□□□□ -1.87
SNX3O60493 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.37□□□□□ -1.87
SNX3O60493 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SNX3O60493 RPL21P65-201ENST00000406094 466 ntBASIC3.37□□□□□ -1.87
SNX3O60493 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.37□□□□□ -1.87
SNX3O60493 RNU4-72P-201ENST00000410754 173 ntBASIC3.37□□□□□ -1.87
SNX3O60493 NDUFB4P5-201ENST00000415445 361 ntBASIC3.37□□□□□ -1.87
SNX3O60493 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.37□□□□□ -1.87
SNX3O60493 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.37□□□□□ -1.87
SNX3O60493 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.37□□□□□ -1.87
SNX3O60493 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.37□□□□□ -1.87
SNX3O60493 BX119904.4-201ENST00000424402 301 ntBASIC3.37□□□□□ -1.87
SNX3O60493 RPL21P66-201ENST00000426566 466 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AL591419.1-201ENST00000427423 339 ntBASIC3.37□□□□□ -1.87
SNX3O60493 OR2AS1P-201ENST00000427827 319 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC016712.1-201ENST00000431088 378 ntBASIC3.37□□□□□ -1.87
SNX3O60493 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.37□□□□□ -1.87
SNX3O60493 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.37□□□□□ -1.87
SNX3O60493 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.37□□□□□ -1.87
SNX3O60493 RPL30P9-201ENST00000465586 330 ntBASIC3.37□□□□□ -1.87
SNX3O60493 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.37□□□□□ -1.87
SNX3O60493 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.37□□□□□ -1.87
SNX3O60493 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SNX3O60493 POU5F1P7-201ENST00000508759 541 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC004062.1-201ENST00000509926 645 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC093840.1-201ENST00000511599 336 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.37□□□□□ -1.87
SNX3O60493 AC017037.2-201ENST00000513850 890 ntBASIC3.37□□□□□ -1.87
SNX3O60493 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.37□□□□□ -1.87
SNX3O60493 MTND5P4-201ENST00000514978 288 ntBASIC3.37□□□□□ -1.87
SNX3O60493 RNA5SP217-201ENST00000515959 91 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.37□□□□□ -1.87
SNX3O60493 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.37□□□□□ -1.87
SNX3O60493 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SNX3O60493 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.37□□□□□ -1.87
SNX3O60493 MRPS36P5-201ENST00000551909 298 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.37□□□□□ -1.87
SNX3O60493 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.37□□□□□ -1.87
SNX3O60493 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.37□□□□□ -1.87
SNX3O60493 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.37□□□□□ -1.87
SNX3O60493 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.37□□□□□ -1.87
SNX3O60493 OR4K8P-201ENST00000578842 1048 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.37□□□□□ -1.87
SNX3O60493 AC097468.3-201ENST00000607956 456 ntBASIC3.37□□□□□ -1.87
SNX3O60493 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC015967.1-201ENST00000619893 476 ntBASIC3.37□□□□□ -1.87
SNX3O60493 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.37□□□□□ -1.87
SNX3O60493 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SNX3O60493 AC079248.2-201ENST00000623779 326 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC097655.1-201ENST00000635075 318 ntBASIC3.37□□□□□ -1.87
SNX3O60493 AC099063.3-201ENST00000642066 185 ntBASIC3.37□□□□□ -1.87
SNX3O60493 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SNX3O60493 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
SNX3O60493 MTND4P16-201ENST00000466108 1367 ntBASIC3.37□□□□□ -1.87
SNX3O60493 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
SNX3O60493 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SNX3O60493 SNORA51.2-201ENST00000364595 132 ntBASIC3.36□□□□□ -1.87
SNX3O60493 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SNX3O60493 RNU6-1207P-201ENST00000384343 107 ntBASIC3.36□□□□□ -1.87
SNX3O60493 AL356421.1-201ENST00000403255 413 ntBASIC3.36□□□□□ -1.87
SNX3O60493 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms