Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
MSH5O43196 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
MSH5O43196 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
MSH5O43196 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
MSH5O43196 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
MSH5O43196 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC9.5□□□□□ -0.89
MSH5O43196 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
MSH5O43196 AC109446.4-201ENST00000623235 2755 ntBASIC9.5□□□□□ -0.89
MSH5O43196 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC9.5□□□□□ -0.89
MSH5O43196 RN7SKP36-201ENST00000363997 312 ntBASIC9.5□□□□□ -0.89
MSH5O43196 Y_RNA.265-201ENST00000364677 108 ntBASIC9.5□□□□□ -0.89
MSH5O43196 Y_RNA.341-201ENST00000365341 102 ntBASIC9.5□□□□□ -0.89
MSH5O43196 U3.15-201ENST00000365398 212 ntBASIC9.5□□□□□ -0.89
MSH5O43196 RN7SKP292-201ENST00000365522 317 ntBASIC9.5□□□□□ -0.89
MSH5O43196 Y_RNA.545-201ENST00000384652 105 ntBASIC9.5□□□□□ -0.89
MSH5O43196 AC096949.1-201ENST00000412047 152 ntBASIC9.5□□□□□ -0.89
MSH5O43196 AC083855.1-201ENST00000440041 258 ntBASIC9.5□□□□□ -0.89
MSH5O43196 MTATP6P21-201ENST00000440681 189 ntBASIC9.5□□□□□ -0.89
MSH5O43196 AC009567.2-201ENST00000502989 349 ntBASIC9.5□□□□□ -0.89
MSH5O43196 AC116917.1-201ENST00000520558 305 ntBASIC9.5□□□□□ -0.89
MSH5O43196 IGHVIII-25-1-201ENST00000522143 241 ntBASIC9.5□□□□□ -0.89
MSH5O43196 DEFB131E-201ENST00000532329 154 ntBASIC9.5□□□□□ -0.89
MSH5O43196 ARF4P1-201ENST00000605447 541 ntBASIC9.5□□□□□ -0.89
MSH5O43196 RN7SL680P-201ENST00000620379 299 ntBASIC9.5□□□□□ -0.89
MSH5O43196 FCGR3A-201ENST00000367967 2086 ntAPPRIS P1 TSL 3 BASIC9.5□□□□□ -0.89
MSH5O43196 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
MSH5O43196 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC9.5□□□□□ -0.89
MSH5O43196 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC9.5□□□□□ -0.89
MSH5O43196 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
MSH5O43196 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
MSH5O43196 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
MSH5O43196 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
MSH5O43196 IQCA1-204ENST00000409907 3281 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
MSH5O43196 OR7E25P-202ENST00000641088 5937 ntBASIC9.49□□□□□ -0.89
MSH5O43196 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC9.49□□□□□ -0.89
MSH5O43196 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
MSH5O43196 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
MSH5O43196 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
MSH5O43196 RNU6-1099P-201ENST00000363533 107 ntBASIC9.49□□□□□ -0.89
MSH5O43196 Y_RNA.179-201ENST00000363844 90 ntBASIC9.49□□□□□ -0.89
MSH5O43196 RNA5SP238-201ENST00000365464 120 ntBASIC9.49□□□□□ -0.89
MSH5O43196 RN7SKP27-201ENST00000410684 333 ntBASIC9.49□□□□□ -0.89
MSH5O43196 NDUFS5P2-201ENST00000484004 306 ntBASIC9.49□□□□□ -0.89
MSH5O43196 PSD2-AS1-201ENST00000515306 412 ntTSL 3 BASIC9.49□□□□□ -0.89
MSH5O43196 SNORA70.12-201ENST00000516084 153 ntBASIC9.49□□□□□ -0.89
MSH5O43196 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC9.49□□□□□ -0.89
MSH5O43196 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC9.49□□□□□ -0.89
MSH5O43196 AC006160.2-201ENST00000637708 154 ntBASIC9.49□□□□□ -0.89
MSH5O43196 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC9.49□□□□□ -0.89
MSH5O43196 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC9.49□□□□□ -0.89
MSH5O43196 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
MSH5O43196 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC9.49□□□□□ -0.89
MSH5O43196 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
MSH5O43196 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC9.49□□□□□ -0.89
MSH5O43196 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
MSH5O43196 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
MSH5O43196 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
MSH5O43196 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
MSH5O43196 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC9.49□□□□□ -0.89
MSH5O43196 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC9.49□□□□□ -0.89
MSH5O43196 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
MSH5O43196 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC9.48□□□□□ -0.89
MSH5O43196 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
MSH5O43196 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC9.48□□□□□ -0.89
MSH5O43196 HNRNPA1P54-201ENST00000411857 9714 ntBASIC9.48□□□□□ -0.89
MSH5O43196 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
MSH5O43196 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC9.48□□□□□ -0.89
MSH5O43196 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
MSH5O43196 NACA-203ENST00000454682 6629 ntTSL 5 BASIC9.48□□□□□ -0.89
MSH5O43196 SNORD115-8-201ENST00000363856 82 ntBASIC9.48□□□□□ -0.89
MSH5O43196 SNORD115-38-201ENST00000365037 82 ntBASIC9.48□□□□□ -0.89
MSH5O43196 AL358075.3-201ENST00000426289 226 ntBASIC9.48□□□□□ -0.89
MSH5O43196 AC112220.1-201ENST00000434628 355 ntBASIC9.48□□□□□ -0.89
MSH5O43196 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC9.48□□□□□ -0.89
MSH5O43196 AC112206.2-201ENST00000503106 557 ntTSL 4 BASIC9.48□□□□□ -0.89
MSH5O43196 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC9.48□□□□□ -0.89
MSH5O43196 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC9.48□□□□□ -0.89
MSH5O43196 AC136624.4-201ENST00000573044 370 ntBASIC9.48□□□□□ -0.89
MSH5O43196 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC9.48□□□□□ -0.89
MSH5O43196 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC9.48□□□□□ -0.89
MSH5O43196 U47924.1-201ENST00000606539 434 ntBASIC9.48□□□□□ -0.89
MSH5O43196 RACK1-235ENST00000626067 564 ntTSL 2 BASIC9.48□□□□□ -0.89
MSH5O43196 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
MSH5O43196 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
MSH5O43196 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC9.48□□□□□ -0.89
MSH5O43196 TLR3-202ENST00000504367 2310 ntTSL 2 BASIC9.48□□□□□ -0.89
MSH5O43196 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
MSH5O43196 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC9.48□□□□□ -0.89
MSH5O43196 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
MSH5O43196 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC9.47□□□□□ -0.89
MSH5O43196 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC9.47□□□□□ -0.89
MSH5O43196 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
MSH5O43196 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
MSH5O43196 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
MSH5O43196 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC9.47□□□□□ -0.89
MSH5O43196 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
MSH5O43196 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC9.47□□□□□ -0.89
MSH5O43196 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
MSH5O43196 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
MSH5O43196 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 154.9 ms