Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 OR4G3P-201ENST00000633500 913 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AL353746.1-201ENST00000566293 6881 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AL672296.1-201ENST00000427780 2158 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 RNU6-50P-201ENST00000362356 103 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 RNU6-1074P-201ENST00000383995 104 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 CYCSP45-201ENST00000402289 315 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 RNU4-47P-201ENST00000410876 114 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 TIMM9P2-201ENST00000419324 266 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AC019178.2-201ENST00000423595 505 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 DUTP6-201ENST00000425573 462 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 USP9YP11-201ENST00000427537 717 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 MTND4P6-201ENST00000438297 472 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AL645638.1-201ENST00000440519 361 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AC092155.2-201ENST00000454675 477 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 HMGN1P18-201ENST00000457642 277 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 RN7SL863P-201ENST00000462370 296 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 ST13P14-201ENST00000474095 734 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 MTCYBP17-201ENST00000503579 789 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 COX7A2P2-201ENST00000505291 250 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 RNU6-1095P-201ENST00000516148 108 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AC024224.1-201ENST00000538284 609 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 SYF2P1-201ENST00000550658 413 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AL049838.1-201ENST00000563647 981 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 MIR5195-201ENST00000583555 115 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 BNIP3P11-201ENST00000603878 563 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AL451074.6-201ENST00000608512 729 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AC025588.4-201ENST00000615802 908 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AC109809.1-201ENST00000619665 545 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 AL590240.3-201ENST00000621416 943 ntBASIC3.24□□□□□ -1.89
LHX3Q9UBR4 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.24□□□□□ -1.89
LHX3Q9UBR4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 SNORA38.1-201ENST00000364172 131 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 SNORD116.1-201ENST00000365628 92 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 BX890604.2-201ENST00000427883 474 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC006028.1-201ENST00000438379 402 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC115115.1-201ENST00000449927 248 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC005297.2-201ENST00000450430 606 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 ELOCP23-201ENST00000452014 332 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 MTCO3P11-201ENST00000455103 774 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AP001992.1-205ENST00000462248 379 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 GTF2IP9-201ENST00000502460 301 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC096751.1-202ENST00000502691 1067 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 MLLT10P2-201ENST00000506434 249 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 USP9YP5-201ENST00000511770 630 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 RNA5SP468-201ENST00000516782 93 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AL132857.1-201ENST00000555180 708 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC099786.3-201ENST00000565735 1410 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 OR4K7P-201ENST00000580232 945 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC004987.4-201ENST00000603383 338 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 DUXAP3-201ENST00000603616 594 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC011468.4-201ENST00000603942 409 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC106052.1-201ENST00000608029 497 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AL360181.4-201ENST00000621752 134 ntBASIC3.23□□□□□ -1.89
LHX3Q9UBR4 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms