Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC006445.2-201ENST00000510061 472 ntBASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 AC079395.1-201ENST00000510981 262 ntBASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 AC017037.2-201ENST00000513850 890 ntBASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 COX6CP8-201ENST00000522620 226 ntBASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 RPL23AP78-201ENST00000599928 470 ntBASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 OR8B1P-202ENST00000641132 1178 ntBASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 AC009093.8-201ENST00000641769 292 ntBASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4AQ9BY43 CEP170P1-201ENST00000502249 4587 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 Y_RNA.234-201ENST00000364409 97 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RNA5SP51-201ENST00000364750 119 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RN7SKP56-201ENST00000410513 331 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 SYF2P2-201ENST00000417620 583 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 HMGB3P20-201ENST00000417997 600 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RPS3AP37-201ENST00000419176 745 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RPL26P6-201ENST00000440913 438 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RPL23AP76-201ENST00000441860 458 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AC009237.8-201ENST00000445492 379 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AC073387.1-201ENST00000453261 709 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 GMPSP1-201ENST00000514075 579 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 MTATP6P9-201ENST00000515039 680 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RNA5SP208-201ENST00000516156 78 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 SNORA19.3-201ENST00000516165 130 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RN7SKP157-201ENST00000516174 282 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 DEFB131D-201ENST00000526803 184 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 OR6C7P-201ENST00000547875 934 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AL360157.1-201ENST00000565962 87 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AP001429.1-201ENST00000602568 530 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 AL158050.2-201ENST00000605336 568 ntBASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
CHMP4AQ9BY43 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC090774.1-201ENST00000435925 246 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC110768.1-201ENST00000509222 400 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC109464.2-201ENST00000510242 943 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 SCARNA15.2-201ENST00000516409 127 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 HMGB1P6-201ENST00000569046 646 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC006116.10-201ENST00000591836 581 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 BRDTP1-201ENST00000605735 677 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AL109620.1-201ENST00000618738 1197 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC009268.2-201ENST00000621925 457 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC090772.4-201ENST00000623599 362 ntBASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
CHMP4AQ9BY43 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 AC007656.2-201ENST00000624902 4547 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 MFSD8-233ENST00000641482 4860 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 RNA5SP124-201ENST00000362739 110 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 HMGN2P8-201ENST00000391458 268 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 MRPL50P2-201ENST00000416821 482 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 AC006989.1-201ENST00000427212 131 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 RPL7L1P10-201ENST00000427790 463 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 TAAR7P-201ENST00000436141 242 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 AC092641.1-201ENST00000440229 772 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 AC091179.1-201ENST00000461606 579 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 RPL31P50-201ENST00000471002 296 ntBASIC4.67□□□□□ -1.66
CHMP4AQ9BY43 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms